View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_51 (Length: 412)
Name: NF1305_low_51
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 217 - 384
Target Start/End: Complemental strand, 52714658 - 52714491
Alignment:
| Q |
217 |
acaaaaaacaccaaatttagttttgcataaaagattacaagtagaggaatatactacttttacttctcttaaaataagaatactccttcatggttgtgtg |
316 |
Q |
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| T |
52714658 |
acaaaaaacaccaaatttagttttgcataaaagattacaagtagaggaatatactacttttacttctcttaaaatatgaatactccttcatggttgtgtg |
52714559 |
T |
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| Q |
317 |
tgttggacgttgctgaattcaaccatgttctcatctctcacagatgattctttcccattgtgataaat |
384 |
Q |
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| T |
52714558 |
tgctggacgttgctgaattcaaccatgttctcatctctcacagatgattctttcccattgtgataaat |
52714491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 142 - 384
Target Start/End: Complemental strand, 52723764 - 52723513
Alignment:
| Q |
142 |
ttttgtaattcgaagatcatttgaattattattatgtttcataatttatttataaaaatttcaatcatacataaaacaaaa-aacaccaaatttagtttt |
240 |
Q |
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| T |
52723764 |
ttttgtaattcgaagatcatttgaat-attattatgtttcatagtttgtttataagaattttgagaatgcataaaataaaagaacaccaaatttagtttt |
52723666 |
T |
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| Q |
241 |
gcataaaa----gattacaagtagaggaatatacta------cttttacttctcttaaaataagaatactccttcatggttgtgtgtgttggacgttgct |
330 |
Q |
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| T |
52723665 |
tcataataaatagattacaaacagaggaatatactattactactattacttctcttaaaa-atgaatcctccttaatggttacgtgtgatggacgttact |
52723567 |
T |
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| Q |
331 |
gaattcaaccatgttctcatctctcacagatgattctttcccattgtgataaat |
384 |
Q |
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| T |
52723566 |
taattcaaccatgttctcatctctcacagatgattctttcccattgtgataaat |
52723513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 223 - 377
Target Start/End: Complemental strand, 52700377 - 52700224
Alignment:
| Q |
223 |
aacaccaaatttagttttgcataaaagattacaagtagaggaatatactacttttacttctcttaaaataagaatactccttcatggttgtgtgtgttgg |
322 |
Q |
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| T |
52700377 |
aacaccaaatttagttttgcataacagattacaaacagaggaatatactgctattacttctcttaaaatatgaatactcctt-atggttatgtgcactgg |
52700279 |
T |
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| Q |
323 |
acgttgctgaattcaaccatgttctcatctctcacagatgattctttcccattgt |
377 |
Q |
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| T |
52700278 |
acgttacttaattcaaccatgttcttatctctcacaatcgattctttccccttgt |
52700224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 10601777 - 10601815
Alignment:
| Q |
15 |
tctatatataccttctctctagcgctaaaccctctcaac |
53 |
Q |
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| T |
10601777 |
tctatctataccttctctctaacgctaaaccctctcaac |
10601815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 6649333 - 6649289
Alignment:
| Q |
82 |
tcaaaagtttgaaccccc-gacccaggatcctgacaacgccactg |
125 |
Q |
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| T |
6649333 |
tcaaaagtttgaaccccctgacctaggatcctgactacgccactg |
6649289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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