View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_55 (Length: 404)

Name: NF1305_low_55
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_55
NF1305_low_55
[»] chr2 (15 HSPs)
chr2 (30-134)||(36278422-36278526)
chr2 (199-302)||(36278253-36278357)
chr2 (199-255)||(25626578-25626634)
chr2 (200-255)||(44068782-44068837)
chr2 (199-257)||(39420191-39420249)
chr2 (201-255)||(410005-410059)
chr2 (199-269)||(14275860-14275930)
chr2 (199-255)||(2641573-2641627)
chr2 (200-256)||(20061054-20061110)
chr2 (199-263)||(32294502-32294566)
chr2 (199-255)||(39364527-39364583)
chr2 (199-258)||(9950374-9950433)
chr2 (225-255)||(27414190-27414220)
chr2 (206-268)||(37619465-37619527)
chr2 (199-255)||(1705071-1705127)
[»] chr8 (3 HSPs)
chr8 (199-255)||(6530411-6530467)
chr8 (199-255)||(15067677-15067733)
chr8 (215-255)||(35865253-35865293)
[»] chr7 (7 HSPs)
chr7 (199-263)||(32786895-32786959)
chr7 (200-255)||(26080973-26081028)
chr7 (200-255)||(26104760-26104815)
chr7 (199-263)||(45837913-45837977)
chr7 (204-258)||(26852600-26852654)
chr7 (223-268)||(25119868-25119913)
chr7 (199-235)||(31054278-31054314)
[»] chr4 (10 HSPs)
chr4 (199-255)||(29508769-29508825)
chr4 (199-255)||(30033484-30033540)
chr4 (200-267)||(24940736-24940803)
chr4 (200-258)||(27918333-27918391)
chr4 (219-268)||(21894833-21894882)
chr4 (215-255)||(22019510-22019550)
chr4 (223-258)||(27918460-27918496)
chr4 (201-269)||(28675671-28675739)
chr4 (199-251)||(36937136-36937188)
chr4 (199-255)||(50297637-50297693)
[»] chr3 (4 HSPs)
chr3 (199-255)||(39430365-39430421)
chr3 (199-255)||(47006701-47006757)
chr3 (200-258)||(28787776-28787833)
chr3 (202-264)||(45628419-45628481)
[»] chr6 (2 HSPs)
chr6 (200-258)||(30438358-30438416)
chr6 (217-263)||(7509634-7509680)
[»] chr1 (7 HSPs)
chr1 (200-263)||(16394931-16394994)
chr1 (210-258)||(31635557-31635605)
chr1 (199-255)||(41884619-41884675)
chr1 (216-259)||(51295700-51295743)
chr1 (217-258)||(43949197-43949238)
chr1 (202-234)||(1035676-1035708)
chr1 (200-248)||(26176316-26176364)
[»] chr5 (5 HSPs)
chr5 (199-252)||(29557577-29557630)
chr5 (205-256)||(40044800-40044851)
chr5 (199-255)||(554288-554344)
chr5 (220-256)||(9780705-9780741)
chr5 (199-255)||(10197098-10197154)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 36278526 - 36278422
Alignment:
Q  30 gattctaaatcatttgaagaaattagtctcctctgatgcatgcaaagtatatcctataataagcatttgttatgaaatataaggataattatgtataaga 129  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36278526 gattctaaaacatttgaagaaattagtctcctctgatgcatgcaaagtatatccaataataagcatttgttatgaaatataaggataattatgtataaga 36278427  T
Q  130 aactc 134  Q
    |||||    
T  36278426 aactc 36278422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 36278357 - 36278253
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaa-gttagcaggaccatttaagtaataatatagttaagagtatatagca 297  Q
    ||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| |||| || |||| |||||||||||||||||||||||||||||||||    
T  36278357 ccaatacaaagttgctctttttaggttccttaacatgtgttcttagggcacaaagttaacatgaccctttaagtaataatatagttaagagtatatagca 36278258  T
Q  298 tgcat 302  Q
    |||||    
T  36278257 tgcat 36278253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 25626578 - 25626634
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    ||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||    
T  25626578 ccaattcaaagttgttcattttaggttccttaacatgtgcccttagggcacaagtta 25626634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 44068837 - 44068782
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||||| |||| | |||||||||||||| |||||||||||||||||    
T  44068837 caatgcaaagttgttcattttagattccttaacatgtgcccttagggcacaagtta 44068782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 39420249 - 39420191
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagc 257  Q
    |||||||||||||| ||||||| |||||||||||||||| | | |||||||||||||||    
T  39420249 ccaatgcaaagttgctctttttaggttccttaacatgtgccttaagggcacaagttagc 39420191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 410005 - 410059
Alignment:
Q  201 aatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||| |  |||| |||||||||||||||| |||||||||||||||||    
T  410005 aatgcaaagttgcttattttaggttccttaacatgtgcccttagggcacaagtta 410059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 14275860 - 14275930
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggaccatttaa 269  Q
    |||||||||| ||| |||||||||||| ||||| ||||| | |||||| ||||||||||| |||| |||||    
T  14275860 ccaatgcaaaattgctctttttgggttgcttaatatgtgcctttagggaacaagttagcatgaccctttaa 14275930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 2641573 - 2641627
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||| ||||||| | |||||||||||||| |||||||||||||||||    
T  2641573 ccaatgcaaagttgctcttttt-gattccttaacatgtg-ccttagggcacaagtta 2641627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 20061110 - 20061054
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttag 256  Q
    ||||||||||||| ||||||| |||| ||||||||||| ||| |||| |||||||||    
T  20061110 caatgcaaagttgctctttttaggttgcttaacatgtgccctaagggaacaagttag 20061054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 32294566 - 32294502
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggacc 263  Q
    |||||| ||| ||| ||||||| ||||| |||||||||| | |||||||||||||||||| ||||    
T  32294566 ccaatgtaaatttgctctttttaggttctttaacatgtgcctttagggcacaagttagcatgacc 32294502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 39364527 - 39364583
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||||| ||||||||||| |||||| ||| ||||| |||| ||||||    
T  39364527 ccaatgcaaagttgttatttttgggttcattaacacgtgcccttatggcataagtta 39364583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 9950374 - 9950433
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagca 258  Q
    |||||||||||||  |||||| |||||| |||||||||| ||||||  ||||||||||||    
T  9950374 ccaatgcaaagttcctcttttcgggttctttaacatgtgcccttagaacacaagttagca 9950433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 27414190 - 27414220
Alignment:
Q  225 tccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||||||||||||||||||||    
T  27414190 tccttaacatgtgtccttagggcacaagtta 27414220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 37619527 - 37619465
Alignment:
Q  206 aaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggaccattta 268  Q
    ||||||| ||||||||||||  |||| | ||| |||||||||||||||||||| |||| ||||    
T  37619527 aaagttgctctttttgggttgtttaagaggtgcccttagggcacaagttagcatgacctttta 37619465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 1705071 - 1705127
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    ||||| |||| ||| ||||||| |||| ||||||||||| ||| |||||||||||||    
T  1705071 ccaatccaaaattgctctttttaggttgcttaacatgtgccctaagggcacaagtta 1705127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 6530411 - 6530467
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  6530411 ccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagtta 6530467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 15067677 - 15067733
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||| |  |||| |||||||||||||||| | ||| |||||||||||    
T  15067677 ccaatgcaaagttgcttattttaggttccttaacatgtgcctttacggcacaagtta 15067733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 35865253 - 35865293
Alignment:
Q  215 ctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||| ||||| ||||||||||||||||||||||| ||||    
T  35865253 ctttttaggttctttaacatgtgtccttagggcacaggtta 35865293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 32786895 - 32786959
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggacc 263  Q
    ||||| |||||||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  32786895 ccaatacaaagttgctcttttcgggttccttaacatgtgcccttagggcacaagttagcatgacc 32786959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 26081028 - 26080973
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    ||||||||| |||||||||||||||||||||||||||| |||||| |||| |||||    
T  26081028 caatgcaaaattgttctttttgggttccttaacatgtgcccttagagcacgagtta 26080973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 26104815 - 26104760
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    ||||||||| |||||||||||||||||||||||||||| |||||| |||| |||||    
T  26104815 caatgcaaaattgttctttttgggttccttaacatgtgcccttagagcacgagtta 26104760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 45837913 - 45837977
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggacc 263  Q
    |||||||||||||| ||||||| | || ||||||||||| ||| |||||||||||||||| ||||    
T  45837913 ccaatgcaaagttgctctttttagattgcttaacatgtgccctaagggcacaagttagcatgacc 45837977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 26852654 - 26852600
Alignment:
Q  204 gcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagca 258  Q
    ||||||||| || ||||  ||||||||||||||||||||||| ||||||||||||    
T  26852654 gcaaagttgctcatttttagttccttaacatgtgtccttaggacacaagttagca 26852600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 25119868 - 25119913
Alignment:
Q  223 gttccttaacatgtgtccttagggcacaagttagcaggaccattta 268  Q
    ||||||||||||||| ||||||||||||||||| || |||| ||||    
T  25119868 gttccttaacatgtgcccttagggcacaagttaacatgacccttta 25119913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 31054278 - 31054314
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatg 235  Q
    |||||| |||||||||||||||| |||||||||||||    
T  31054278 ccaatgtaaagttgttctttttgtgttccttaacatg 31054314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 29508769 - 29508825
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||    
T  29508769 ccaatgcaaaattgctctttttgggttccttaacatgtgcccttagggcacaagtta 29508825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 30033540 - 30033484
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||| |||||||| |||||||||||| || | |||||||||||||||    
T  30033540 ccaatgcaaagttgctctttttgagttccttaacatatgcctttagggcacaagtta 30033484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 24940736 - 24940803
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggaccattt 267  Q
    ||||||||| ||| ||||||||| || |||||||||||  ||||||| |||||||| || ||||||||    
T  24940736 caatgcaaacttgctctttttggattgcttaacatgtgctcttagggaacaagttaacaagaccattt 24940803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 27918391 - 27918333
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagca 258  Q
    ||||||||| ||| ||||||||| |||||||||||||| ||||| | |||| |||||||    
T  27918391 caatgcaaaattgctctttttggattccttaacatgtgcccttaagacacacgttagca 27918333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 21894833 - 21894882
Alignment:
Q  219 ttgggttccttaacatgtgtccttagggcacaagttagcaggaccattta 268  Q
    ||||||||||||||||||| | | |||||||||||||||| |||| ||||    
T  21894833 ttgggttccttaacatgtgccgtaagggcacaagttagcatgacccttta 21894882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 22019510 - 22019550
Alignment:
Q  215 ctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
T  22019510 cttttcgggtttcttaacatgtgcccttagggcacaagtta 22019550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 27918460 - 27918496
Alignment:
Q  223 gttccttaacatgtgtcctt-agggcacaagttagca 258  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27918460 gttccttaacatgtgtccttgagggcacaagttagca 27918496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 28675739 - 28675671
Alignment:
Q  201 aatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggaccatttaa 269  Q
    |||||||| ||| |||| || |||| ||||||||||| ||| ||||||||||||| || |||| |||||    
T  28675739 aatgcaaaattgctcttattaggttgcttaacatgtgccctaagggcacaagttaacatgaccctttaa 28675671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 36937188 - 36937136
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaa 251  Q
    |||||| ||| ||| ||| |||| ||||||||||||||||| |||||||||||    
T  36937188 ccaatgtaaaattgctctgtttgagttccttaacatgtgtcattagggcacaa 36937136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 50297693 - 50297637
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||| ||  ||||||| |||| ||||||||||| ||| |||||||||||||    
T  50297693 ccaatgcaaaattactcttttttggttgcttaacatgtgccctaagggcacaagtta 50297637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 39430365 - 39430421
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||    
T  39430365 ccaatgcaaagttgctctttttgagttccttaacatatgtccttaggacacaagtta 39430421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 47006701 - 47006757
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||| | |||||||||||||||||||||  |||||||||||||||||    
T  47006701 ccaatgcaaagttgctttttttgggttccttaacatgtacccttagggcacaagtta 47006757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 28787776 - 28787833
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagca 258  Q
    ||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||    
T  28787776 caatgcaaagttgtt-tttttgggttccgtaacaagtgtctttagggcacaagttagca 28787833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 45628419 - 45628481
Alignment:
Q  202 atgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggacca 264  Q
    ||||| ||||| | ||||| |||||||||| ||||| ||||||| |||||||||||| |||||    
T  45628419 atgcagagttgctttttttaggttccttaatatgtgcccttaggacacaagttagcatgacca 45628481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 30438416 - 30438358
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagca 258  Q
    |||| ||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||    
T  30438416 caatacaaagttattctttttaggttccttaacatgtgtacttaggacacaagttagca 30438358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 7509680 - 7509634
Alignment:
Q  217 ttttgggttccttaacatgtgtccttagggcacaagttagcaggacc 263  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  7509680 ttttgggtttcttaacatgtgcccttagggcacaagttagcatgacc 7509634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 16394931 - 16394994
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagttagcaggacc 263  Q
    |||||||||||||||| |||||||||||||||| |||| ||||| | || ||||||||| ||||    
T  16394931 caatgcaaagttgttcattttgggttccttaacttgtgcccttatgacataagttagcatgacc 16394994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 31635557 - 31635605
Alignment:
Q  210 ttgttctttttgggttccttaacatgtgtccttagggcacaagttagca 258  Q
    ||||||||||| |||||||||||||||| |||||| | |||||||||||    
T  31635557 ttgttctttttaggttccttaacatgtgcccttagagtacaagttagca 31635605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 41884675 - 41884619
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||||||||| || || |||||||||||||||| | ||| |||||||||||    
T  41884675 ccaatgcaaagttgtttttgttaggttccttaacatgtgcctttaaggcacaagtta 41884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 51295743 - 51295700
Alignment:
Q  216 tttttgggttccttaacatgtgtccttagggcacaagttagcag 259  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||    
T  51295743 tttttgggtttcttaacatgtgccctaagggcacaagttagcag 51295700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 43949197 - 43949238
Alignment:
Q  217 ttttgggttccttaacatgtgtccttagggcacaagttagca 258  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||    
T  43949197 ttttgggtttcttaacatgtgccctaagggcacaagttagca 43949238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 1035676 - 1035708
Alignment:
Q  202 atgcaaagttgttctttttgggttccttaacat 234  Q
    |||||||||||||||||||||||| ||||||||    
T  1035676 atgcaaagttgttctttttgggtttcttaacat 1035708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 26176364 - 26176316
Alignment:
Q  200 caatgcaaagttgttctttttgggttccttaacatgtgtccttagggca 248  Q
    ||||||||| |||||  |||| |||||||||||||||||| ||||||||    
T  26176364 caatgcaaaattgttactttttggttccttaacatgtgtcattagggca 26176316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 29557577 - 29557630
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaag 252  Q
    ||||| |||||||| || |||||||||||||||||||||  |||||||||||||    
T  29557577 ccaatacaaagttgctcattttgggttccttaacatgtgctcttagggcacaag 29557630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 40044851 - 40044800
Alignment:
Q  205 caaagttgttctttttgggttccttaacatgtgtccttagggcacaagttag 256  Q
    |||| ||| |||||||||||||||||||||||| ||||| | ||||||||||    
T  40044851 caaaattgctctttttgggttccttaacatgtgcccttacgacacaagttag 40044800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 554344 - 554288
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||||||| |||||| |||||| || |||||||||||  |||||| |||||||||    
T  554344 ccaatgcaaaattgttcattttggatttcttaacatgtgctcttaggacacaagtta 554288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 9780741 - 9780705
Alignment:
Q  220 tgggttccttaacatgtgtccttagggcacaagttag 256  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  9780741 tgggttacttaacatgtgcccttagggcacaagttag 9780705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 10197098 - 10197154
Alignment:
Q  199 ccaatgcaaagttgttctttttgggttccttaacatgtgtccttagggcacaagtta 255  Q
    |||||| ||||||||||||||| |||| |||||||| || | ||||| |||||||||    
T  10197098 ccaatgtaaagttgttctttttaggttacttaacatatgcctttaggacacaagtta 10197154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University