View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_56 (Length: 395)
Name: NF1305_low_56
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_56 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 98 - 390
Target Start/End: Complemental strand, 883891 - 883609
Alignment:
| Q |
98 |
cattattgtttccaaatcaatagaaatattttctctagaaaagatagaagaaatggctgcagcagaaggagtgagtctgaaccatatagctcgagagtcc |
197 |
Q |
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| T |
883891 |
cattattgtttccaaatcaatagaaatattttctctagaaaagatagaagaaatggctgcagcagaaggagtgagtctgaaccatatagctcgagagtcc |
883792 |
T |
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| Q |
198 |
accgacgtaaaaagactctccaaattctaccaagaggttagttagcatttagcctatgaaactcagacactcatcttgtttgataccaacacagcactta |
297 |
Q |
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| T |
883791 |
accgacgtaaaaagactctccaaattctaccaagaggttagttagcatttaacctatgaa----------tcatcttgtttgataccaatacaacactga |
883702 |
T |
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| Q |
298 |
cacatataatcacattgaattatgtaactttttaaaattattatttgtatcgattgtctaatgttcgtgtatgtgttcctgcttcatctcact |
390 |
Q |
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| T |
883701 |
caaatgtagtcacattgaattatgtaactttttaaaattattatttgtatcgattgtctaatgttcgtgtatgtgttcatgcttcatatcact |
883609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 38749571 - 38749615
Alignment:
| Q |
297 |
acacatataatcacattgaattatgtaactttttaaaattattat |
341 |
Q |
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| T |
38749571 |
acacatataattacattgaattatgtcattttttcaaattattat |
38749615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 99944 - 99900
Alignment:
| Q |
297 |
acacatataatcacattgaattatgtaactttttaaaattattat |
341 |
Q |
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| T |
99944 |
acacatataattacattgaattatgttattttctaaaattattat |
99900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 3677835 - 3677783
Alignment:
| Q |
299 |
acatataatcacattgaattatgtaactttttaaaattattatttgtatcgat |
351 |
Q |
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| T |
3677835 |
acatataattacatagaattatgtgattttttaaaattattaattgtgtcgat |
3677783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 18013077 - 18013125
Alignment:
| Q |
292 |
cacttacacatataatcacattgaattatgtaactttttaaaattatta |
340 |
Q |
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| T |
18013077 |
cactgacacatataattacactgaattatgtaatttttttaaattatta |
18013125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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