View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_low_58 (Length: 394)
Name: NF1305_low_58
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_58 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 10116509 - 10116221
Alignment:
| Q |
11 |
ttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10116509 |
ttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttc |
10116410 |
T |
|
| Q |
111 |
ttcaacatgtaaactttcaattaaaaacatatatgattatgtaagtagccttagtttctctgttctctctattgttacattagcttccaccatttgatag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
10116409 |
ttcaacatgtaaactttcaattaaaaacatatatgattatgtaagtagccttagtttctctgttctctctattgctacattagcttccaccttttgatag |
10116310 |
T |
|
| Q |
211 |
aatacagtgcaagtttgtgtgtaaaactagattatggaattagggtttcttagagaaattgagatatgtaactaactccataacaaact |
299 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10116309 |
aacacagtgcaagtttgtgtgtaaaactagattatggaattagggtttcttagagaaattgagatatgtaactaactccataacaaact |
10116221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 45810242 - 45810056
Alignment:
| Q |
11 |
ttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttc |
110 |
Q |
| |
|
||||||| ||||||| | |||||||||||||||| |||| ||||| || | ||||| ||||||||||||| | | ||||| ||||||||||||||||| |
|
|
| T |
45810242 |
ttattctgaagaatgcaaaagttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaagggcttc |
45810143 |
T |
|
| Q |
111 |
ttcaacatgtaaactttca----attaaaaacatatatgattatgtaagtagccttagtttctctgttctctctattgttacattagcttc |
197 |
Q |
| |
|
| ||| |||| |||||||| ||| | ||||||||||| ||||||||||| || ||||||| ||||||| ||||| |||||||||| |
|
|
| T |
45810142 |
tgcaaaatgtcaactttcaatttattgataacatatatga-tatgtaagtag---tattttctctattctctcctttgtttcattagcttc |
45810056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 41591667 - 41591735
Alignment:
| Q |
205 |
tgatagaatacagtgcaagtttgtgtgtaaaactagattatggaattagggtttcttagagaaattgaga |
274 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
41591667 |
tgatagaacaaagtgcaagtttgtgtgtaaaactagtttatggaattaggg-ttcttagagaaattgaga |
41591735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 1403820 - 1403941
Alignment:
| Q |
11 |
ttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttc |
110 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||||||||| | | || | | ||||| ||||||||| |||||||||||||||| ||| || |
|
|
| T |
1403820 |
ttattctggataatgcaagagttttagaaactatgtcaatctggtgctacaagagatggcctaaagcagaaagagtattatcctcatgtccaaaggcatc |
1403919 |
T |
|
| Q |
111 |
ttcaacatgtaaactttcaatt |
132 |
Q |
| |
|
| |||||||| ||||| ||||| |
|
|
| T |
1403920 |
tgcaacatgtcaacttacaatt |
1403941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 410623 - 410685
Alignment:
| Q |
70 |
tctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaatt |
132 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
410623 |
tctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaatt |
410685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 1400099 - 1400220
Alignment:
| Q |
11 |
ttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttc |
110 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| |||||||||| | | || | | | ||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
1400099 |
ttattctgcagaatgcaagagttttagaaactatgccaatctggtgctacatgagatggcccaaagcagaaagagtattattctcatgtccaagggcttc |
1400198 |
T |
|
| Q |
111 |
ttcaacatgtaaactttcaatt |
132 |
Q |
| |
|
| ||||||| ||||||||||| |
|
|
| T |
1400199 |
tgtaacatgtcaactttcaatt |
1400220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 965205 - 965079
Alignment:
| Q |
11 |
ttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctcta------aaatagaaagagtgttatcctcatgtccaag |
104 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| ||||| | | |||| | |||| || |||||||||| ||||| ||||||| || |
|
|
| T |
965205 |
ttattctggagaatgcaagagttttagaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatag |
965106 |
T |
|
| Q |
105 |
ggcttcttcaacatgtaaactttcaat |
131 |
Q |
| |
|
|||||||||| ||||| |||| ||||| |
|
|
| T |
965105 |
ggcttcttcagcatgtcaactctcaat |
965079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 821420 - 821570
Alignment:
| Q |
11 |
ttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttc |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| | | |||| ||| |||||||||| ||||| |||| ||||||||||| |
|
|
| T |
821420 |
ttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaagtcgattatctccatgcccaagggcttc |
821519 |
T |
|
| Q |
111 |
ttcaacatgtaaactttca----attaaaaacatatatgattatgtaagta |
157 |
Q |
| |
|
| |||||||| |||||||| ||| | |||||||| ||||||||||||| |
|
|
| T |
821520 |
tgcaacatgtcaactttcattttattgataacatatacgattatgtaagta |
821570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 299
Target Start/End: Original strand, 41591816 - 41591847
Alignment:
| Q |
268 |
attgagatatgtaactaactccataacaaact |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41591816 |
attgagatatgtaactaactccataacaaact |
41591847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 12105613 - 12105715
Alignment:
| Q |
30 |
agttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
129 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||| ||| ||||||||||| ||| |||| ||| |||| |||||| |||||||| |||||||| |
|
|
| T |
12105613 |
agttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaagagcttctgcaacatgtcaactttca |
12105712 |
T |
|
| Q |
130 |
att |
132 |
Q |
| |
|
||| |
|
|
| T |
12105713 |
att |
12105715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 1445771 - 1445672
Alignment:
| Q |
30 |
agttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
129 |
Q |
| |
|
||||||||||||||||||||| ||||| | | | ||||| ||| | |||||||||| || |||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
1445771 |
agttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaagggcttctgcaacatgtaaattttca |
1445672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 48675153 - 48675098
Alignment:
| Q |
74 |
aaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
129 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
48675153 |
aaatagaaagggaattatcctcatgtccaagggcctctgcaacatgtcaactttca |
48675098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University