View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_60 (Length: 384)
Name: NF1305_low_60
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 56 - 304
Target Start/End: Original strand, 40006241 - 40006491
Alignment:
| Q |
56 |
agcagcaccacagacagcaagagggagtttcccacaacaactatgcctatgatgattgtgggg-gtcttgtcatctgcgagcttagctatttattctaaa |
154 |
Q |
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| T |
40006241 |
agcagcaacaaaaacagcaagagggagtttcccacaacaactatgcctatgatgattgtggggggtcttgtcatctgcgagcttagctatttattctaaa |
40006340 |
T |
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| Q |
155 |
ttattaagattaattggaaagaaatcaaatgtatgatatggtatatacg-nnnnnnnnnttcaagaaaaccaatcgagtactttcaaaactcaagatggt |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40006341 |
ttattaagattaattggaaagaaatcaaatgtatgatatggtatatatgaaaaaaaaaattcaagaaaaccaatcgagtactttcaaaactcaagacggt |
40006440 |
T |
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| Q |
254 |
tgtgcaccatacctatttatgagcttatcaaaatttcaaaggacttaactg |
304 |
Q |
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| T |
40006441 |
tgtgcaccatacctatttatgtgcttatcaaaatttcaaaggacttaactg |
40006491 |
T |
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