View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_61 (Length: 381)
Name: NF1305_low_61
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 29 - 332
Target Start/End: Original strand, 31775256 - 31775559
Alignment:
| Q |
29 |
agaattttgaatggcataattcctccttacgttatgtgtactttgaaatactttttcgacaattgactatagtggcgtagtcgccttaccaacgtgctaa |
128 |
Q |
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| T |
31775256 |
agaattttgaatggcataattcctccttacgttatgtgtactttgaaatactttttcgacaattgactatagtggcgtagtcgccttaccaacgtgctaa |
31775355 |
T |
|
| Q |
129 |
ctcttgaaattgcaagtttttgggaagttgttttgtgacaatgatagttagttaccattgtttttacctaatataacacttgaccattttaacaagctat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31775356 |
ctcttgaaattgcaagtttttgggaagttgttttgtgagaatgatagttagttaccattgtttttacctaatataatacttgaccattttaacaagctat |
31775455 |
T |
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| Q |
229 |
ttctcaaggttttccttaaaaattgttagactagtttctatgttctaacaattttctgcatacatacttctgatgttcttattcgctcgttctctgtggt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
31775456 |
ttctcaaggttttccttaaaaattgttagactagtttctatgttctaacaattttctgcatacatacttctgatgttcttattcgctcgttctctttgat |
31775555 |
T |
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| Q |
329 |
gctg |
332 |
Q |
| |
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|||| |
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| T |
31775556 |
gctg |
31775559 |
T |
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