View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_63 (Length: 376)
Name: NF1305_low_63
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_63 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 72 - 376
Target Start/End: Original strand, 2289358 - 2289670
Alignment:
| Q |
72 |
agcagcaccacagaaaagttaagggcactaagtattgataaagtgcatataagaacctaactaccaagctttgcnnnnnnnnn-----gaagcaccaagt |
166 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||| |||| |
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| T |
2289358 |
agcagcaccacaaaaaagttaagggcacaaagtattgataaagtgcatataaaaagcttactaccaagctttgcaacaaaaaaaaaaagaagcactaagt |
2289457 |
T |
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| Q |
167 |
attaactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaattgtttgc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2289458 |
attaactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaactgtttgc |
2289557 |
T |
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| Q |
267 |
tattcatcacttgctgaaatttcattcttaccatgaataatatcttcaacatt---actcactttctcagcaccttcgctttcctctgcgccggatttct |
363 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289558 |
tattcatcacttgctgaaatttcattcttaccattaataatatcttcaacattgagactcactttctcagcaccttcgctttcctctgcgccggatttct |
2289657 |
T |
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| Q |
364 |
cttgcttataact |
376 |
Q |
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||||||||||||| |
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| T |
2289658 |
cttgcttataact |
2289670 |
T |
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