View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_67 (Length: 368)
Name: NF1305_low_67
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 11996229 - 11996535
Alignment:
| Q |
1 |
tatcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttagcaac |
100 |
Q |
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| T |
11996229 |
tatcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaagaattattgtataggcattcatagaagctttagcaac |
11996328 |
T |
|
| Q |
101 |
agtataggcagctgcaaacctaggccaaccttttcttcctaaagtcccttgttcaaaatctttgataaactcctttattacttcatctattctttcttct |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||| | |||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
11996329 |
agtataggcagctgcaaacctaggccaacctttactttctaaggaaccttcttcaaaatctttgataaactcctctaacacttcatctattctttcttct |
11996428 |
T |
|
| Q |
201 |
gtaaggttttcaacatcactgaacactcctttagcccattcattgaatacacactgctttgacatcaatatcaatgataatgcgaatttggtcaaaggaa |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11996429 |
gtaaggttttcaacatcactgaagactcctttagcccattcatttgatactaactgatatgacatcaatatcaatgataatgcgaatttggtcaaaggaa |
11996528 |
T |
|
| Q |
301 |
attgagt |
307 |
Q |
| |
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||||||| |
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| T |
11996529 |
attgagt |
11996535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 12007977 - 12008241
Alignment:
| Q |
12 |
acataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttagcaacagtataggcag |
111 |
Q |
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| T |
12007977 |
acataaccagggcaaacacaattgatgcagaaaccagggtacttttttgcaataattcttgtataggcattcatagaagctttaccaacaacataggcag |
12008076 |
T |
|
| Q |
112 |
ctgcaaacctaggccaaccttttcttcctaaagtcccttgttcaaaatctttgataaactcctttattacttcatctattctttcttctgtaaggttttc |
211 |
Q |
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||||||| |||||||||| ||||||| |||| | ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
12008077 |
ctgcaaatctaggccaacattttctttctaaggacccttcttcaaaatctttgataaactcatttatcacttcatctattctttcttctgtaaggttttc |
12008176 |
T |
|
| Q |
212 |
aacatcactgaacactcctttagcccattcattgaatacacactgctttgacatcaatatcaatg |
276 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||||||||| ||| |||| |||||||||| |
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| T |
12008177 |
aacatcactgaacactcctttagcccactcatttgatacacactgatttaacataaatatcaatg |
12008241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 11986691 - 11986923
Alignment:
| Q |
12 |
acataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttagcaacagtataggcag |
111 |
Q |
| |
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| T |
11986691 |
acataaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaggcattcatagaagctttagcaatagtatagggag |
11986790 |
T |
|
| Q |
112 |
ctgcaaacctaggccaaccttttcttcctaaagtcccttgttcaaaatctttgataaactcctttattacttcatctattctttcttctgtaaggttttc |
211 |
Q |
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|| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
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| T |
11986791 |
ctataaacctaggccaaccttttctttctaaggacccttgttcaaaatctttgataaactcctttattacttcatctattctctcatctgtaagattttc |
11986890 |
T |
|
| Q |
212 |
aacatcactgaacactcctttagcccattcatt |
244 |
Q |
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| T |
11986891 |
aacatcactgaagactcctttagcccactcatt |
11986923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 12002751 - 12003005
Alignment:
| Q |
12 |
acataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttagcaacagtataggcag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
12002751 |
acataaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaagcattcatagaagctttagcaacagtataggcag |
12002850 |
T |
|
| Q |
112 |
ctgcaaacctaggccaaccttttcttcctaaagtcccttgttcaaaatctttgataaactcctttattacttcatctattctttcttctgtaaggttttc |
211 |
Q |
| |
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| | | |||||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
12002851 |
ccaaatatctaggccaaccttttctttctaaggacccttcttcaaaatctttgataaactcctttatcacttcatctattctctcttctgtaagattttc |
12002950 |
T |
|
| Q |
212 |
aacatcactgaacactcctttagcccattcattgaatacacactgctttgacatc |
266 |
Q |
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|||||||||||| |||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
12002951 |
aacatcactgaagactcctttagcccattcattcgatacaaactaatttgacatc |
12003005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 11972269 - 11972351
Alignment:
| Q |
14 |
ataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttag |
96 |
Q |
| |
|
||||||||||||||||| ||||||||| | | | ||| |||| || ||||| |||||||||||||||||||||| |||||||| |
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| T |
11972269 |
ataaccagggcaaacactattgatgcatatagtaggaaattttttagcaagaattcttgtatatgcattcatagcagctttag |
11972351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 11978076 - 11978160
Alignment:
| Q |
12 |
acataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttag |
96 |
Q |
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|||||||||||||||| || ||||||||| ||| | ||| | ||||| ||||| ||||||||||| |||||||||| |||||||| |
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| T |
11978076 |
acataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttag |
11978160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 11982710 - 11982794
Alignment:
| Q |
12 |
acataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttag |
96 |
Q |
| |
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|||||||||||||||| || ||||||||| ||| | ||| | ||||| ||||| ||||||||||| |||||||||| |||||||| |
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| T |
11982710 |
acataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttag |
11982794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 5217452 - 5217509
Alignment:
| Q |
302 |
ttgagtgttgccgacaatatatacaggttgatagtgcaaacaagtatgggatattatt |
359 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5217452 |
ttgaatgttgccgacaatatatacaggttgatagtgcaaacaagtatgggatattatt |
5217509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 28881595 - 28881511
Alignment:
| Q |
156 |
aaatctttgataaactcctttattacttcatctattctttcttctgtaaggttttcaacatcactgaacactcctttagcccatt |
240 |
Q |
| |
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||||||||||||||||| ||| ||||| ||||||||| ||||||||||| ||||||| |||| ||||| | ||||||||||| |
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| T |
28881595 |
aaatctttgataaactctattagtactttatctattctctcttctgtaagattttcaatatcatcaaacacccttttagcccatt |
28881511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 28886373 - 28886292
Alignment:
| Q |
159 |
tctttgataaactcctttattacttcatctattctttcttctgtaaggttttcaacatcactgaacactcctttagcccatt |
240 |
Q |
| |
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|||||||||||||| |||| ||| ||||||||| | ||||||||||| ||||||| |||| ||||| | ||||||||||| |
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| T |
28886373 |
tctttgataaactcttttagtacctcatctattttctcttctgtaagattttcaatatcatcaaacacccttttagcccatt |
28886292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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