View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_68 (Length: 361)
Name: NF1305_low_68
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 12551490 - 12551803
Alignment:
| Q |
20 |
gcacacacttcaacaatttcaatgaacttacctttatttttaattaaacgacacatacactacctaatccagtaatactaaatttcatagtaatattttt |
119 |
Q |
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| T |
12551490 |
gcacacacttcaacaatttcaatgaacttacctttatttttaattaaacgacacatacactacctaatccagtaatactaaatttcatagtaatattttt |
12551589 |
T |
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| Q |
120 |
gtaacaaaataaaattctctccatagctgaaaaatgccaaaatagtctctaactagctaggttgcttctttgacacttcttcctcaaatgtcaaatcata |
219 |
Q |
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| T |
12551590 |
gtaacaaaataaaattctctccatagctgaaaaatgccaaaatagtctctaactagctaggttgcttctttgacacttcttcctcaaatgtcagctcata |
12551689 |
T |
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| Q |
220 |
cgtgttaatttcttgaagnnnnnnntaatagcaaaaatgatggcatactacacctataaaatcccacataatatgcaacctatgctaagtttcctataac |
319 |
Q |
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| T |
12551690 |
cgtgttaatttcttgaagaaaaaaataatagcaaaaatgatggcatactacacctataaaatcccacataatatgcaacctatgctaagtttcctataac |
12551789 |
T |
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| Q |
320 |
ctatagttttgtct |
333 |
Q |
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|||||||||||||| |
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| T |
12551790 |
ctatagttttgtct |
12551803 |
T |
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