View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_69 (Length: 359)
Name: NF1305_low_69
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 353
Target Start/End: Original strand, 42638937 - 42639288
Alignment:
| Q |
6 |
gtccaataatatgatatcatttattcaaatatatataccaagtat----tgtatggctagctagcttagcaagtaaggttatcaccaggagcaacaccca |
101 |
Q |
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| T |
42638937 |
gtccaacattatgatatcatttattcaaatatatatactaagtatatattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacaccca |
42639036 |
T |
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| Q |
102 |
actcactacaatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgc |
201 |
Q |
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| T |
42639037 |
actcactacaatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgc |
42639136 |
T |
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| Q |
202 |
accaaaaccttggttgatgacaccgtgcacattattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgag |
301 |
Q |
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| T |
42639137 |
accaaaaccttggttgatgacaccgtgcacgttattcatccaataccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgag |
42639236 |
T |
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| Q |
302 |
ttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttcc |
353 |
Q |
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| T |
42639237 |
ttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttcc |
42639288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 48 - 339
Target Start/End: Original strand, 42633903 - 42634197
Alignment:
| Q |
48 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
147 |
Q |
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| T |
42633903 |
tattgtatggattgctagcttagcagttaagcttatcaccaggagcaacacccagttgactacaatattgagtgtagtaatcaacacgagccttaactgt |
42634002 |
T |
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| Q |
148 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaacc---ttggttgatgacaccgtgcacattattcatccaa |
244 |
Q |
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| T |
42634003 |
gttggggtcaacaccgtcacattcaagtcgaccattaatggctctaaccgttgcaccaaagccttgttggttcatgacattgtgcacatgattcatccaa |
42634102 |
T |
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| Q |
245 |
taccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtcc |
339 |
Q |
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| T |
42634103 |
taccataatgctgtcttgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagctggtcc |
42634197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 48 - 215
Target Start/End: Original strand, 42628384 - 42628551
Alignment:
| Q |
48 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
147 |
Q |
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| T |
42628384 |
tattgtatggattgctagcttagaaagtaagcttatcaccaggagcaacacccaattgactacaatattgagtgtagcaaccaacacgagtctgaactgt |
42628483 |
T |
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| Q |
148 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggt |
215 |
Q |
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| T |
42628484 |
agttggcttagcaccatcacattcaagtcgaccattaatggctctagtggttgcaccaaagccttggt |
42628551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
274 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
324 |
Q |
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| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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