View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_7 (Length: 674)
Name: NF1305_low_7
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 67 - 645
Target Start/End: Complemental strand, 40114235 - 40113657
Alignment:
| Q |
67 |
ggtatattatatcttcatgagggttgtcaaaaaagatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcctcaggtat |
166 |
Q |
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| T |
40114235 |
ggtatattatatcttcatgagggttgtcaaaaaagatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcctcaggtat |
40114136 |
T |
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| Q |
167 |
atatgctttggattcttttatagtatttttgtgtttaccttatagacaaaatacaattttttggaagattctgcattatatgtgatggaccaaatctttc |
266 |
Q |
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| T |
40114135 |
atatgctttggattcttttatagtatttttgtgtttaccttatagacaaaatacaattttttggaagattctgcattatatgtgatggaccaaatctctc |
40114036 |
T |
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| Q |
267 |
tttcaacatcacctttcttgtctcgtgatccttttttgttttgttacatgttatgtattgttccatttcaacatgtttacaaaacttttagtgccacatt |
366 |
Q |
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| T |
40114035 |
tttcaacatcacctttcttgtctcgtgatccttttttgttttgttacatgttatgtattgttccatttcaacatgtttacaaaacttttagtgccacatt |
40113936 |
T |
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| Q |
367 |
taatannnnnnnngggcgcagatttgtgattttggcctagcaaaatggttgccagagaattggactcaccataacgtttcaaaatttgaaggaacttttg |
466 |
Q |
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| T |
40113935 |
taatattttttttgggcgcagatttgtgattttggcctagcaaaatggttgccagagaattggactcaccataacgtttcaaaatttgaaggaacttttg |
40113836 |
T |
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| Q |
467 |
ggtttgtaacattcaaattaattgttactgtactttctgtaatggtaaaattaagtattaaataaatattaattaactcatcaagttcaatttatgatga |
566 |
Q |
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| T |
40113835 |
ggtttgtaacattcaaattaattgttactgtactttctgtaatggtaaaattaagtattaaattaatattaattaactcatcaagttcaatttatgatga |
40113736 |
T |
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| Q |
567 |
ctttccacagctaccttgctccagaatacttacttcatggcatagtagatgagaaaacagatgtatttgcatttggtgt |
645 |
Q |
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| T |
40113735 |
ctttccacagctaccttgctccagaatacttacttcatggcatagtagatgagaaaacagatgtatttgcatttggtgt |
40113657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 6987932 - 6987844
Alignment:
| Q |
76 |
tatcttcatgagggttgtcaaaaaagatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcctcaggt |
164 |
Q |
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| T |
6987932 |
tatctgcatgagggatgtcaaagaaggattattcacaaagatatcaaagcttctaatatacttctctcagaggactttgagcctcaggt |
6987844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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