View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_71 (Length: 358)
Name: NF1305_low_71
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 81 - 281
Target Start/End: Complemental strand, 48806496 - 48806296
Alignment:
| Q |
81 |
gcaccacagattccacacacatcaaccaaatcacactagaccctgcaagctactcaggctcactcacgccactcatctctaaactcacccaactcatcac |
180 |
Q |
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| T |
48806496 |
gcaccacagattccacacacatcaaccaaatcacactagaccctgcaagctactcaggctcactcacgccactcatctctaaactcacccaactcatcac |
48806397 |
T |
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| Q |
181 |
actagacctctctgataacaacttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaattccttctct |
280 |
Q |
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| T |
48806396 |
actagacctctctgataacaacttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaattccttctct |
48806297 |
T |
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| Q |
281 |
g |
281 |
Q |
| |
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| |
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| T |
48806296 |
g |
48806296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 13567584 - 13567652
Alignment:
| Q |
202 |
cttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaa |
270 |
Q |
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| T |
13567584 |
cttctctggctctattccttcttcaatatcttccctttccaacctcaaaatcttaaccctctgatccaa |
13567652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 31860152 - 31860080
Alignment:
| Q |
202 |
cttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaattcc |
274 |
Q |
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| T |
31860152 |
cttctctgactctattccttcttcaatatctagcctttccaacctcaaaatcttaaccctctgatccaattcc |
31860080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 44339175 - 44339218
Alignment:
| Q |
215 |
attccttcttcaatctcttccctttccaacctcaaaaccttaac |
258 |
Q |
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| T |
44339175 |
attccttcttcaatatcttccctttccaacctcaaaatcttaac |
44339218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 34057041 - 34057160
Alignment:
| Q |
89 |
gattccacacacatcaaccaaatcacactagaccctgcaagctactcaggctcactcacgccactcatctctaaactcacccaactcatcacactagacc |
188 |
Q |
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||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||| ||| |
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| T |
34057041 |
gattccacacacatcaatcaaatcaccctcaaccctgcaagctactcaggctcactcacctcactcatctctcaactcaccaaacttgtcacactatacc |
34057140 |
T |
|
| Q |
189 |
tctctgataacaacttcttt |
208 |
Q |
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| || | |||||||||||| |
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| T |
34057141 |
tatccggcaacaacttcttt |
34057160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 5061940 - 5061885
Alignment:
| Q |
203 |
ttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaac |
258 |
Q |
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|||| |||||| |||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
5061940 |
ttctctggctctattccttcttcaatatcttccctttccaacctcaaaatcttaac |
5061885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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