View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_72 (Length: 357)
Name: NF1305_low_72
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 52 - 337
Target Start/End: Complemental strand, 18060632 - 18060354
Alignment:
| Q |
52 |
cacagattaaaaatatattaaagaaagtgacaccaatatctatagggtatatcaaaatactcaaacatnnnnnnnnnntagaaattgttcaaatgttaca |
151 |
Q |
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|||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||| |
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| T |
18060632 |
cacaaattaaaaatagattaaagaaagtgacaccaatatccatagggtatatcaaaatattcaaatataaaaaaaaaatagaaattgttcaaat------ |
18060539 |
T |
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| Q |
152 |
tcaagtcataaatctactagggagcatggccaaccttagcacgcttacatcgcataatctcctccaaactcagctaagatggacttccctactccaccgt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18060538 |
-caagtcataaatctactagggagcatggccaaccttagcacgcctacatcacataatctcctccaaactcagctaagacggacttccctactccaccgt |
18060440 |
T |
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| Q |
252 |
accaccacccatgacccttctgatatgttttctgatgcgccctcactgtccgtttatgtttaggaactggtggtctctctgctcct |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| |
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| T |
18060439 |
accaccacccatgacccttctgatatgttttctgatgcgccctcaatgtccgtttatgtttaggaactggtggtctccctactcct |
18060354 |
T |
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