View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_76 (Length: 349)
Name: NF1305_low_76
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 30164614 - 30164426
Alignment:
| Q |
78 |
caccacagacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacac |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30164614 |
caccacagacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccaaaccacccgcctagcccgattatcacacggggcgtacac |
30164515 |
T |
|
| Q |
178 |
attaaacaaataaaactcttcattagattgcaaaaaacgaccatgaataaccaaaacatgctccacagaaacaatagaccacacttcca |
266 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
30164514 |
attaaacaaataaaactcttcattagagtgcaaaaaacgaccatgaataaccaaaacatgctccacggaaacagtagaccacacttcca |
30164426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 7660596 - 7660408
Alignment:
| Q |
78 |
caccacagacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacac |
177 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7660596 |
caccacagacacacagaagagcaccgcgtagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacac |
7660497 |
T |
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| Q |
178 |
attaaacaaataaaactcttcattagattgcaaaaaacgaccatgaataaccaaaacatgctccacagaaacaatagaccacacttcca |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||| |
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| T |
7660496 |
attaaacaaataaaactcttcattagattgcaaaaaacgaccatgaataaccaaaacatgctccatataaacagtagactacacttcca |
7660408 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 272
Target Start/End: Complemental strand, 45567122 - 45566928
Alignment:
| Q |
78 |
caccacagacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacac |
177 |
Q |
| |
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||||||| ||||| | | ||| ||| |||| || ||| |||||||||||||| |||||||| | |||||||||||| ||||| ||||| || || || || |
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| T |
45567122 |
caccacatacacaaacatgagtaccacgcaaaggaccaagacgcaaggataaggattcccataacacccgcctagctcgattgtcacaaggagcataaac |
45567023 |
T |
|
| Q |
178 |
attaaacaaataaaactcttcattagattgcaaaaaacgaccatgaataaccaaaacatgctccacagaaacaatagaccacacttccatctctg |
272 |
Q |
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||| |||| || |||||||||| ||||| |||||| || ||||||||||||||||||||||| | ||| || |||||||||| |||| ||||| |
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| T |
45567022 |
atttaacagatggaactcttcatcagatttcaaaaatcggccatgaataaccaaaacatgctcaaaggaagcagtagaccacacctccacctctg |
45566928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 20471745 - 20471866
Alignment:
| Q |
119 |
cgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaacaaataaaactcttcattagattgcaaaaaacgac |
218 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||||| ||||| || || || ||||||||||||| |||||||||||| ||| |||||| |||| |
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| T |
20471745 |
cgcaaggataaggattcccacaaaacctgcctagcccgattgtcacatggagcataaacattaaacaaatggaactcttcattaaatttcaaaaaccgac |
20471844 |
T |
|
| Q |
219 |
catgaataaccaaaacatgctc |
240 |
Q |
| |
|
|||||||||| || |||||||| |
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| T |
20471845 |
catgaataactaagacatgctc |
20471866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 10484203 - 10484064
Alignment:
| Q |
120 |
gcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaacaaataaaactcttcattagattgcaaaaaacgacc |
219 |
Q |
| |
|
|||| ||||| |||||||| | |||| ||||||||||| ||||| || || || | ||||||||||| |||||||||||||||| || ||| ||||| |
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| T |
10484203 |
gcaaagataaggattcccataacacctgcctagcccgaaagtcacaaggagcataaatattaaacaaatggaactcttcattagatttcagaaaccgacc |
10484104 |
T |
|
| Q |
220 |
atgaataaccaaaacatgctccacagaaacaatagaccac |
259 |
Q |
| |
|
||||||||| ||||||||||| | |||||| |||||||| |
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| T |
10484103 |
atgaataactaaaacatgctctaaggaaacagtagaccac |
10484064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 8719125 - 8719272
Alignment:
| Q |
119 |
cgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaacaaataaaactcttcattagattgcaaaaaacgac |
218 |
Q |
| |
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||||| ||||| |||||||| | ||||||||||||| || ||||| || || || | |||||||| || |||||||||||||||| || ||| |||| |
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| T |
8719125 |
cgcaaagataaggattcccataacacccgcctagcctgagagtcacaaggagcataaatattaaacagatggaactcttcattagatttcagaaaccgac |
8719224 |
T |
|
| Q |
219 |
catgaataaccaaaacatgctccacagaaacaatagaccacacttcca |
266 |
Q |
| |
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|||||||||| |||||||||| | |||||| |||||||||| |||| |
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| T |
8719225 |
catgaataactaaaacatgctttaaggaaacagtagaccacacatcca |
8719272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 29306297 - 29306343
Alignment:
| Q |
160 |
atcacacggggcgtacacattaaacaaataaaactcttcattagatt |
206 |
Q |
| |
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|||||||||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
29306297 |
atcacacggggcatacatattgaacatataaaactcttcattagatt |
29306343 |
T |
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