View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_78 (Length: 342)

Name: NF1305_low_78
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_78
NF1305_low_78
[»] chr1 (5 HSPs)
chr1 (30-333)||(1463245-1463547)
chr1 (32-169)||(1496270-1496407)
chr1 (200-283)||(1482197-1482280)
chr1 (238-333)||(1496118-1496213)
chr1 (200-265)||(4154249-4154314)
[»] chr8 (1 HSPs)
chr8 (30-333)||(26791003-26791297)
[»] chr3 (2 HSPs)
chr3 (32-164)||(50276783-50276915)
chr3 (251-330)||(50276996-50277075)
[»] chr4 (1 HSPs)
chr4 (35-96)||(53074842-53074903)
[»] chr2 (1 HSPs)
chr2 (30-134)||(15869738-15869842)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 333
Target Start/End: Original strand, 1463245 - 1463547
Alignment:
Q  30 ttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagttacatggccctaatgacagtcatattttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463245 ttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagttacatggccctaatgacagtcatattttt 1463344  T
Q  130 ctgggccatgcatgattccgactttttctcggtaaattaaatttatatatgtttatannnnnnncatttaaatatcatcaccaactaggagaaatactaa 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  1463345 ctgggccatgcatgattctgactttttctcggtaaattaaatttatatatgtttata-ttttttcatttaaatatcatcaccaactaggagaaatactaa 1463443  T
Q  230 gcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463444 gcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagta 1463543  T
Q  330 taat 333  Q
    ||||    
T  1463544 taat 1463547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 1496407 - 1496270
Alignment:
Q  32 aaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagttacatggccctaatgacagtcatatttttct 131  Q
    ||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| |||| || || ||||||||||| |||||||||||  |||||||||    
T  1496407 aaaccatctccactacctgatagttggaaactgagggagatatttgctactggtgttgtcctaggaagttacatggcactaatgacagtagtatttttct 1496308  T
Q  132 gggccatgcatgattccgactttttctcggtaaattaa 169  Q
    |||| ||| | ||| || |||| || ||||||||||||    
T  1496307 gggcgatgaaagataccaacttcttttcggtaaattaa 1496270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 1482197 - 1482280
Alignment:
Q  200 aatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgaga 283  Q
    ||||||||||||||| || | |||| ||||||||||| | ||||||| |||||| |||||||||||||| ||||||||||||||    
T  1482197 aatatcatcaccaacaagaaaaaatgctaagcactattacctttaaatatgttgaaggacaagtttggtatgaggtctttgaga 1482280  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 1496213 - 1496118
Alignment:
Q  238 agctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagtataat 333  Q
    ||||||| | ||||||||| ||||||||||||||||| || | ||| ||||||||| |||||||||||| ||| |||| || ||||| ||||||||    
T  1496213 agctttatatatgttgcagaacaagtttggtgtgaggcctataagacataatcctgatgagatgatggcggctttatatctacaagttagtataat 1496118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 4154314 - 4154249
Alignment:
Q  200 aatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagttt 265  Q
    ||||||||||| ||||||||||||  ||||||| ||| | ||||||| |||||| |||||||||||    
T  4154314 aatatcatcacaaactaggagaaaacctaagcattattacctttaaatatgttgaaggacaagttt 4154249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 333
Target Start/End: Original strand, 26791003 - 26791297
Alignment:
Q  30 ttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagttacatggccctaatgacagtcatattttt 129  Q
    |||||||||||||| | |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26791003 ttaaaccatctccattgcctgatagttggaaacttaaggagatatttgctactggtattgtgcttggcagttacatggcactaatgacagtcatattttt 26791102  T
Q  130 ctgggccatgcatgattccgactttttctcggtaaattaaatttatatatgtttatannnnnnncatttaaatatcatcaccaactaggagaaatactaa 229  Q
    |||||| ||| | ||| | ||||||||||||||||| | ||||||||| | | | |        | ||||| |||||||| |||||||||||||| ||||    
T  26791103 ctgggcaatgaacgatactgactttttctcggtaaa-tcaatttatatttctattt-----tgtcttttaagtatcatcatcaactaggagaaatcctaa 26791196  T
Q  230 gcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagta 329  Q
    | |  ||  |||||||| |    |||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||| | ||||| ||||||||||    
T  26791197 gtatcatttgctttaaata---cgcaggacacgtttggtgtgaggtctttgagagatagtcctgatgagatgatggcagctttgtacctacaagtcagta 26791293  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 50276783 - 50276915
Alignment:
Q  32 aaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagttacatggccctaatgacagtcatatttttct 131  Q
    |||||||||||| | || || || |||||||| |  || ||||||||||||||| ||||||| || || |||||||| |||||||||||  | |||||||    
T  50276783 aaaccatctccaatgccagacagttggaaactgagagagatatttgctactggtgttgtgctaggtagctacatggcactaatgacagtggtgtttttct 50276882  T
Q  132 gggccatgcatgattccgactttttctcggtaa 164  Q
    ||  |||| | ||| |||| || ||||||||||    
T  50276883 ggctcatgaaggataccgatttcttctcggtaa 50276915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 50276996 - 50277075
Alignment:
Q  251 ttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagtat 330  Q
    ||||||||||||||||||||||| ||  | ||||| || |||| ||| ||||||||||| || ||||| |||||||||||    
T  50276996 ttgcaggacaagtttggtgtgagatcaatcagaaacaaccctgatgaaatgatggcagccctctacctacaagtcagtat 50277075  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 53074903 - 53074842
Alignment:
Q  35 ccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttgg 96  Q
    ||||||||| | ||||||||||||||| | || ||||||||||||||||| ||||| |||||    
T  53074903 ccatctccattgcctgatagctggaaattgaaagaaatatttgctactggaattgttcttgg 53074842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 15869738 - 15869842
Alignment:
Q  30 ttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagttacatggccctaatgacagtcatattttt 129  Q
    |||| ||||||||| | ||||||||||||||||| |  ||||||||||| |||||| |  |||||||  ||||| ||||  | ||||| || ||||| ||    
T  15869738 ttaagccatctccaatgcctgatagctggaaactgagagaaatatttgcaactggtgtcatgcttggaggttacttggcaatgatgactgtgatattctt 15869837  T
Q  130 ctggg 134  Q
    |||||    
T  15869838 ctggg 15869842  T

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