View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_79 (Length: 341)

Name: NF1305_low_79
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_79
NF1305_low_79
[»] chr6 (11 HSPs)
chr6 (78-229)||(20133504-20133655)
chr6 (78-229)||(22199214-22199365)
chr6 (103-148)||(27002306-27002351)
chr6 (103-148)||(27017812-27017857)
chr6 (103-148)||(7987195-7987240)
chr6 (103-148)||(27192288-27192333)
chr6 (103-148)||(27204141-27204186)
chr6 (103-148)||(27245045-27245090)
chr6 (103-148)||(27256908-27256953)
chr6 (103-148)||(30548287-30548332)
chr6 (103-148)||(30563558-30563603)
[»] scaffold0003 (1 HSPs)
scaffold0003 (103-148)||(18715-18760)
[»] chr7 (5 HSPs)
chr7 (103-148)||(16455506-16455551)
chr7 (103-191)||(10840175-10840263)
chr7 (103-148)||(16440604-16440649)
chr7 (103-148)||(17242291-17242336)
chr7 (103-148)||(16161733-16161778)
[»] chr5 (9 HSPs)
chr5 (103-148)||(22898018-22898063)
chr5 (86-146)||(30466690-30466751)
chr5 (103-148)||(26772921-26772966)
chr5 (103-148)||(27283158-27283203)
chr5 (103-148)||(30144352-30144397)
chr5 (103-148)||(30178402-30178447)
chr5 (86-146)||(34494465-34494526)
chr5 (103-148)||(33510991-33511036)
chr5 (103-148)||(33526254-33526299)
[»] chr4 (6 HSPs)
chr4 (103-148)||(17086079-17086124)
chr4 (103-148)||(34194633-34194678)
chr4 (108-191)||(17240664-17240747)
chr4 (103-148)||(21964333-21964378)
chr4 (103-148)||(21979576-21979621)
chr4 (94-146)||(6558170-6558222)
[»] scaffold0143 (1 HSPs)
scaffold0143 (103-191)||(21942-22030)
[»] chr3 (8 HSPs)
chr3 (103-148)||(28333858-28333903)
chr3 (103-148)||(28348960-28349005)
chr3 (86-146)||(14142547-14142608)
chr3 (103-148)||(17975035-17975080)
chr3 (103-148)||(17990583-17990628)
chr3 (103-148)||(18219767-18219812)
chr3 (103-148)||(18235075-18235120)
chr3 (86-146)||(18525048-18525109)
[»] chr2 (8 HSPs)
chr2 (103-148)||(35763509-35763554)
chr2 (103-148)||(16819675-16819720)
chr2 (103-148)||(16834916-16834961)
chr2 (103-148)||(16874897-16874942)
chr2 (86-146)||(21693867-21693928)
chr2 (86-146)||(21708648-21708709)
chr2 (103-147)||(32044420-32044464)
chr2 (103-147)||(32059616-32059660)
[»] scaffold1536 (1 HSPs)
scaffold1536 (94-148)||(1119-1173)
[»] scaffold0750 (1 HSPs)
scaffold0750 (86-146)||(141-202)
[»] scaffold0347 (1 HSPs)
scaffold0347 (86-146)||(17234-17295)
[»] scaffold0252 (1 HSPs)
scaffold0252 (103-148)||(1120-1165)
[»] scaffold0027 (1 HSPs)
scaffold0027 (103-148)||(129949-129994)
[»] chr8 (1 HSPs)
chr8 (103-148)||(4486624-4486669)
[»] chr1 (1 HSPs)
chr1 (103-148)||(47767144-47767189)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 78 - 229
Target Start/End: Complemental strand, 20133655 - 20133504
Alignment:
Q  78 accacagaatccggatcacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctcacattcaaaggaactgaaccgaaattgaacca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20133655 accacagaatccggatcacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctcacattcaaaggaactgaaccgaaattgaacca 20133556  T
Q  178 gtccggttcagttgccaataaatataagttcacaccggtttattcatttgca 229  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20133555 gtccggttcagttgcctataaatataagttcacaccggtttattcatttgca 20133504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 22199214 - 22199365
Alignment:
Q  78 accacagaatccggatcacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctcacattcaaaggaactgaaccgaaattgaacca 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22199214 accacagaatccggatcacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctcacattcaaaggaactgaaccgaaattgaacca 22199313  T
Q  178 gtccggttcagttgccaataaatataagttcacaccggtttattcatttgca 229  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22199314 gtccggttcagttgcctataaatataagttcacaccggtttattcatttgca 22199365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 27002351 - 27002306
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  27002351 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 27002306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 27017857 - 27017812
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  27017857 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 27017812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 7987240 - 7987195
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  7987240 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 7987195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 27192333 - 27192288
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  27192333 cgttggattgatccaaggtcctaaaccctagatctaagggctcaca 27192288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 27204186 - 27204141
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  27204186 cgttggattgatccaaggtcctaaaccctagatctaagggctcaca 27204141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 27245045 - 27245090
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  27245045 cgttggattgatccaaggtcctaaaccctagatctaagggctcaca 27245090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 27256908 - 27256953
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  27256908 cgttggattgatccaaggtcctaaaccctagatctaagggctcaca 27256953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 30548287 - 30548332
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  30548287 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 30548332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 30563558 - 30563603
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  30563558 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 30563603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 18715 - 18760
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  18715 cgttggattgatccaagatcccaaaccctagatctaaaggctcaca 18760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 16455506 - 16455551
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  16455506 cgttggattgatccaagatcccaaaccctagatctaaaggctcaca 16455551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 10840175 - 10840263
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcacattcaaag-gaactgaaccgaaattgaaccagtccggttcagttg 191  Q
    |||||||||| |||||||| ||||||||||||||||| ||| |||| | || | ||| ||||||  ||||||||| ||||||||||||||    
T  10840175 cgttggattggtccaagatgaaaaaccctagatctaacggc-cacaatgaaggagaaatgaaccagaattgaaccggtccggttcagttg 10840263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 16440604 - 16440649
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||    
T  16440604 cgttggattgatccaagctcccaaaccctagatctaaaggctcaca 16440649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 17242336 - 17242291
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  17242336 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 17242291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 16161778 - 16161733
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    |||||||||||||||||| |  ||||||||||||||| ||||||||    
T  16161778 cgttggattgatccaagaccccaaaccctagatctaagggctcaca 16161733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 22898063 - 22898018
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  22898063 cgttggattgatccaagatcccaaaccctagatctaaaggctcaca 22898018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 30466690 - 30466751
Alignment:
Q  86 atccggat-cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||||||| |||||||||||||||||||||||| ||  | ||||||||||||||||||||||    
T  30466690 atccggatgcacaaggagcgttggattgatccaggaagagaaaccctagatctaaaggctca 30466751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 26772966 - 26772921
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  26772966 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 26772921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 27283203 - 27283158
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  27283203 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 27283158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 30144397 - 30144352
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  30144397 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 30144352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 30178447 - 30178402
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  30178447 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 30178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 34494465 - 34494526
Alignment:
Q  86 atccggat-cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||||||| |||| ||||||||||||||||||||||    ||||||||||||||||||||||    
T  34494465 atccggatgcacagggagcgttggattgatccaagaaaccaaaccctagatctaaaggctca 34494526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 33511036 - 33510991
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  33511036 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 33510991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 33526299 - 33526254
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  33526299 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 33526254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 17086124 - 17086079
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  17086124 cgttggattgatccaagatcccaaaccctagatctaaaggctcaca 17086079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 34194633 - 34194678
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  34194633 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 34194678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 17240747 - 17240664
Alignment:
Q  108 gattgatccaagatcaaaaaccctagatctaaaggctcacattcaaag-gaactgaaccgaaattgaaccagtccggttcagttg 191  Q
    |||||||||| ||| ||||||||||||||||| ||| |||| | || | ||| ||||||| ||||||||| ||||||||||||||    
T  17240747 gattgatccaggatgaaaaaccctagatctaacggc-cacaatgaaggagaaatgaaccggaattgaaccggtccggttcagttg 17240664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 21964378 - 21964333
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  21964378 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 21964333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 21979621 - 21979576
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  21979621 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 21979576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 6558170 - 6558222
Alignment:
Q  94 cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||| ||||||||||||||||||| ||    ||||||||||||||||||||||    
T  6558170 cacagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 6558222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 22030 - 21942
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcacattcaaag-gaactgaaccgaaattgaaccagtccggttcagttg 191  Q
    |||||||||| |||||||| ||||||||||||||||| ||| |||| | || | ||| ||||||  ||||||||| ||||||||||||||    
T  22030 cgttggattggtccaagatgaaaaaccctagatctaacggc-cacaatgaaggagaaatgaaccagaattgaaccggtccggttcagttg 21942  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 28333903 - 28333858
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  28333903 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 28333858  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 28349005 - 28348960
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  28349005 cgttggattgatccaagatcccaaaccctagatctaagggctcaca 28348960  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 14142547 - 14142608
Alignment:
Q  86 atccggat-cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||||||| |||| ||||||||||||||||||| ||    ||||||||||||||||||||||    
T  14142547 atccggatacacagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 14142608  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 17975035 - 17975080
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  17975035 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 17975080  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 17990583 - 17990628
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  17990583 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 17990628  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 18219812 - 18219767
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  18219812 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 18219767  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 18235120 - 18235075
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  18235120 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 18235075  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 18525109 - 18525048
Alignment:
Q  86 atccggat-cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||||||| |||| ||||||||||||||||||| ||    ||||||||||||||||||||||    
T  18525109 atccggatgcacagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 18525048  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 35763554 - 35763509
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  35763554 cgttggattgatccaagatcccaaaccctagatctaatggctcaca 35763509  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 16819675 - 16819720
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  16819675 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 16819720  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 16834916 - 16834961
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  16834916 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 16834961  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 16874897 - 16874942
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  16874897 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 16874942  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 21693867 - 21693928
Alignment:
Q  86 atccggat-cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||||||| |||| ||||||||||||||||||| ||    ||||||||||||||||||||||    
T  21693867 atccggatacacagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 21693928  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 21708648 - 21708709
Alignment:
Q  86 atccggat-cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||||||| |||| ||||||||||||||||||| ||    ||||||||||||||||||||||    
T  21708648 atccggatacacagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 21708709  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 32044464 - 32044420
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcac 147  Q
    ||||||||||||||||| ||  ||||||||||||||| |||||||    
T  32044464 cgttggattgatccaaggtcccaaaccctagatctaagggctcac 32044420  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 32059660 - 32059616
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcac 147  Q
    ||||||||||||||||| ||  ||||||||||||||| |||||||    
T  32059660 cgttggattgatccaaggtcccaaaccctagatctaagggctcac 32059616  T

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Target: scaffold1536 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1536
Description:

Target: scaffold1536; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 1173 - 1119
Alignment:
Q  94 cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    |||| ||| ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  1173 cacagggaccgttggattgatccaaggtcctaaaccctagatctaagggctcaca 1119  T

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Target: scaffold0750 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 141 - 202
Alignment:
Q  86 atccggat-cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||||||| |||| ||||||||||||||||||| ||    ||||||||||||||||||||||    
T  141 atccggatgcacagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 202  T

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Target: scaffold0347 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 17234 - 17295
Alignment:
Q  86 atccggat-cacaaggagcgttggattgatccaagatcaaaaaccctagatctaaaggctca 146  Q
    |||||||| |||| ||||||||||||||||||| ||    ||||||||||||||||||||||    
T  17234 atccggatacacagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 17295  T

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Target: scaffold0252 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 1120 - 1165
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  1120 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 1165  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 129949 - 129994
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  129949 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 129994  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 4486624 - 4486669
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  4486624 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 4486669  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 47767189 - 47767144
Alignment:
Q  103 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 148  Q
    ||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  47767189 cgttggattgatccaaggtcccaaaccctagatctaagggctcaca 47767144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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