View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_80 (Length: 340)

Name: NF1305_low_80
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_80
NF1305_low_80
[»] chr8 (3 HSPs)
chr8 (120-338)||(11151918-11152139)
chr8 (13-55)||(11152204-11152246)
chr8 (244-316)||(10260986-10261058)
[»] chr3 (2 HSPs)
chr3 (244-316)||(23780291-23780363)
chr3 (244-315)||(4858103-4858174)
[»] chr4 (3 HSPs)
chr4 (244-338)||(53591462-53591556)
chr4 (244-308)||(9734256-9734320)
chr4 (239-311)||(22210215-22210287)
[»] chr5 (3 HSPs)
chr5 (244-311)||(28076671-28076738)
chr5 (247-319)||(1954380-1954452)
chr5 (245-309)||(25640394-25640458)
[»] chr1 (3 HSPs)
chr1 (244-338)||(27308604-27308698)
chr1 (244-319)||(10550791-10550866)
chr1 (244-312)||(27292234-27292302)
[»] chr2 (2 HSPs)
chr2 (244-295)||(40412488-40412539)
chr2 (133-191)||(18419300-18419358)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 120 - 338
Target Start/End: Complemental strand, 11152139 - 11151918
Alignment:
Q  120 tataacctatcaatatttgtactacattgtttaatcaatgtttcacatgcgttgtttcatatggtttaatttattattannnnnnnnnnnataattttct 219  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||    
T  11152139 tataacctatcaatatttgtactacattgcttaatcaatgtttcacatgcgttgtttcatatggtttaatttattatt-----tttttttataattttct 11152045  T
Q  220 tgtatgcatgt--------atatggatcgtcatttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagag 311  Q
    |||||||||||        ||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||| |||    
T  11152044 tgtatgcatgttcaaatcaatatggatcatcatttttgcaattcggtttcgcgctcatacgtgggttcgctggattgtccgtggcagtgattgtttggag 11151945  T
Q  312 ttgttgtttggattttaccactttgta 338  Q
    |||||||||| ||||||||||||||||    
T  11151944 ttgttgtttgtattttaccactttgta 11151918  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 11152246 - 11152204
Alignment:
Q  13 taggcatggtatggggtagtagaggtgctagggctatccagta 55  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  11152246 taggcatggtatggggtagtagaggtgctagggctacccagta 11152204  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 10261058 - 10260986
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagagttgtt 316  Q
    |||||||||||||||||| | |||||||||  ||||| |||||| || |||| ||| ||||||||| ||||||    
T  10261058 tttttgcaattcggtttcacgctcatacgtatgttcgctggattatctgtggtagtgattgtttagggttgtt 10260986  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 23780291 - 23780363
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagagttgtt 316  Q
    |||||||||||||||||||  ||||| | ||| |||| |||||||||||||||||| ||||||||||||||||    
T  23780291 tttttgcaattcggtttcgtgctcatgcatgaattcgctggattgtccgtggcagtgattgtttagagttgtt 23780363  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 4858174 - 4858103
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagagttgt 315  Q
    ||||||||||||||||| || |||||||||| ||||| || ||||||||| | ||| ||||||||| |||||    
T  4858174 tttttgcaattcggtttggcgctcatacgtgggttcgctgaattgtccgtagtagtgattgtttagggttgt 4858103  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 53591556 - 53591462
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagagttgttgtttggattttaccactttgta 338  Q
    ||||||||||||| |||| | |||||||||| ||||| | ||||||| |||||||| || ||||||||||||||||||  |  ||||||||||||    
T  53591556 tttttgcaattcgatttcacgctcatacgtgggttcgatagattgtctgtggcagtgatcgtttagagttgttgtttgtttaataccactttgta 53591462  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 9734256 - 9734320
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgttta 308  Q
    |||||||||||||||||||  | || ||||| ||||| | |||||||||||| ||| ||||||||    
T  9734256 tttttgcaattcggtttcgtgcccacacgtgggttcgctagattgtccgtggtagtgattgttta 9734320  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 22210215 - 22210287
Alignment:
Q  239 cgtcatttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagag 311  Q
    |||| ||||| |||||||||||||| |||| |||||  |||| |||||||||||||  ||| | |||||||||    
T  22210215 cgtcttttttacaattcggtttcgcgctcacacgtggattcgctggattgtccgtgttagtgaatgtttagag 22210287  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 28076738 - 28076671
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagag 311  Q
    ||||||||||||||||||| ||  | ||||| |||||||||||||||||||| ||| |||||||||||    
T  28076738 tttttgcaattcggtttcgttcctacacgtgggttcgttggattgtccgtggtagtgattgtttagag 28076671  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 1954380 - 1954452
Alignment:
Q  247 ttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagagttgttgtt 319  Q
    |||||||||||||||||  |||||||||  |||| || |||||| |||||||| ||||||||| |||||||||    
T  1954380 ttgcaattcggtttcgcgttcatacgtggattcgctgaattgtctgtggcagtgattgtttagggttgttgtt 1954452  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 25640458 - 25640394
Alignment:
Q  245 ttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttag 309  Q
    ||||||||||||||||||| | || ||||| ||||| |||||||||||||| ||| |||||||||    
T  25640458 ttttgcaattcggtttcgcgcccacacgtgggttcgctggattgtccgtggtagtgattgtttag 25640394  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 27308698 - 27308604
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagagttgttgtttggattttaccactttgta 338  Q
    |||||||||||| ||||| | |||||| ||| ||||  |||||||| ||||| ||| ||||||||||||||||||||| ||| || |||| ||||    
T  27308698 tttttgcaattccgtttcacgctcatatgtgggttcactggattgttcgtggtagtgattgtttagagttgttgtttgtattatatcactctgta 27308604  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 10550791 - 10550866
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagagttgttgtt 319  Q
    |||||||||||||||||||  |||||||||| ||| | ||||||||||||| || | ||||||||  |||||||||    
T  10550791 tttttgcaattcggtttcgtgctcatacgtgggtttgctggattgtccgtgacaatgattgtttaaggttgttgtt 10550866  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 27292302 - 27292234
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtggcagtaattgtttagagt 312  Q
    |||||||||||||||||||  | || ||||| ||| | ||| |||||||||| ||| ||||||||||||    
T  27292302 tttttgcaattcggtttcgtgcccacacgtgggtttgctggtttgtccgtggtagtgattgtttagagt 27292234  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 40412539 - 40412488
Alignment:
Q  244 tttttgcaattcggtttcgctctcatacgtgagttcgttggattgtccgtgg 295  Q
    ||||||||||| |||||||| |||||||||||||||| || |||||| ||||    
T  40412539 tttttgcaatttggtttcgcgctcatacgtgagttcgctgaattgtcagtgg 40412488  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 18419300 - 18419358
Alignment:
Q  133 tatttgtactacattgtttaatcaatgtttcacatgcgttgtttcatatggtttaattt 191  Q
    |||| ||||||| |||||||||| | ||||||| ||  |||||||||||||||||||||    
T  18419300 tattggtactactttgtttaatctaagtttcacttgtcttgtttcatatggtttaattt 18419358  T

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