View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_84 (Length: 329)
Name: NF1305_low_84
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_84 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 25039623 - 25039334
Alignment:
| Q |
11 |
cagagacaggtgaagcactagaactccaaacaaacatatgaagatcttcttgtttctgttgactttgaccattacttttcttagcattaacactaacatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25039623 |
cagagacaggtgaagcactagaactccaaacaaacatatgaagatcttcttgtttctgttgactttgaccattactcttcttagcattaacactaacatt |
25039524 |
T |
|
| Q |
111 |
agaaccaagatttttgctaccattattattattagtaggagaaaacattcctggattaggtgcaggatagtttttgaatttcttagcattattattagct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25039523 |
agaaccaagatttttgctaccattattattattagtaggagaaaacattcctggattaggtgcaggatagtttttgaatttcttagcattattattagct |
25039424 |
T |
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| Q |
211 |
tcttcttcataattagaaggtcttggagtaacacctcttgaattagcagataaaccataattattaacaacatcattagcaccaaagttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25039423 |
tcttcttcataattagaaggtcttggagtaacacctcttgaattagcagataaaccatagttattaacaacatcattagcaccaaagttt |
25039334 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 34971721 - 34971674
Alignment:
| Q |
11 |
cagagacaggtgaagcactagaactccaaacaaacatatgaagatctt |
58 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34971721 |
cagaaacaggtgaagcacttgaactccaaacaaacatatgaagatctt |
34971674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 52717311 - 52717275
Alignment:
| Q |
11 |
cagagacaggtgaagcactagaactccaaacaaacat |
47 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |
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| T |
52717311 |
cagaaacaggtgaagcacttgaactccaaacaaacat |
52717275 |
T |
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