View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_low_87 (Length: 326)
Name: NF1305_low_87
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_87 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 85 - 326
Target Start/End: Complemental strand, 5007738 - 5007498
Alignment:
| Q |
85 |
cacagacaaagataccagacacaacacggacacgtcgaaacaagtaataatttaagaaaatggataattaaatgtaatcacatatatcggtgttttgtca |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5007738 |
cacagacaaagataccagacacaacacgaacacgtcgaaacaagtaataatttaagaaaatggataattaaatgtaatcacatatatcggtgttttgtca |
5007639 |
T |
|
| Q |
185 |
gtgttgggacacaagacaaacattcaatttgaagtatcggtgctgcatagctcgtgacaactgactcttaagcatatcaattttaaattcaaacatgagt |
284 |
Q |
| |
|
|||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5007638 |
gtgtcag-acacaagacatacattcaatttgaagtatcagtgctgcatagctcgtgacaactgacttttaagcatatcaattttaaattcaaacatgagt |
5007540 |
T |
|
| Q |
285 |
gctattttctgttgccaacaaaaacatcaactatggatggca |
326 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5007539 |
gctatcttctgttgccaacaaaaacatcaactatggatggca |
5007498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 19045568 - 19045626
Alignment:
| Q |
131 |
ataatttaagaaaatggat-aattaaatgtaatcacatatatcggtgttttgtcagtgt |
188 |
Q |
| |
|
||||||||| |||||| || |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19045568 |
ataatttaaaaaaatgaattaattaaatgtaatcacatatataggtgttatgtcagtgt |
19045626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 29365015 - 29365052
Alignment:
| Q |
130 |
aataatttaagaaaatgg-ataattaaatgtaatcaca |
166 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29365015 |
aataatttaagaaaatggtataattaaatgtaatcaca |
29365052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 43886571 - 43886641
Alignment:
| Q |
98 |
accagacacaacacggacacgtcgaaacaagtaataatttaagaaaatgga-taattaaatgtaatcacat |
167 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||||||||| |||| | | |||||| |||||||||| |
|
|
| T |
43886571 |
accagacacaacactaacacgtcgacaccagtaataatttaagataatgaattgattaaacgtaatcacat |
43886641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 33498620 - 33498669
Alignment:
| Q |
113 |
gacacgtcgaaacaagtaataatttaagaaaatgg-ataattaaatgtaa |
161 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
33498620 |
gacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaa |
33498669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 52067077 - 52067121
Alignment:
| Q |
102 |
gacacaacacggacacgtcgaaacaagtaataatttaagaaaatg |
146 |
Q |
| |
|
|||||||||| |||||||||| || | |||||||||||||||||| |
|
|
| T |
52067077 |
gacacaacactgacacgtcgataccaataataatttaagaaaatg |
52067121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University