View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_88 (Length: 325)
Name: NF1305_low_88
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 28451213 - 28450912
Alignment:
| Q |
1 |
aaacacattgagacatgtttctattttcttagggatcaagtaaacatagataagttggaaatcaagcatcgcaagatagaagaatcgattgcatatttgt |
100 |
Q |
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| T |
28451213 |
aaacacattgagacatgtttctattttcttagggatcaagtaaacatagataagttggaaatcaagcatcgcaagatagaagaatcgattgcatatttgt |
28451114 |
T |
|
| Q |
101 |
tagccaagtctctaaagacgagcaactttgaatacttgaggaacaatctaggaatggttgaagtcactaactaatgaattaaggaggtgtattaggaagt |
200 |
Q |
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| T |
28451113 |
taaccaagtctctaaagacgagcaactttgaatacttgaggaacaatctaggaatggttgaagtcactaactaatgaattaaggaggtgtattaggaagt |
28451014 |
T |
|
| Q |
201 |
taattcagttaattagttagcatgattttatgagttaaggagtttacttgttgaacaagtaaactaagttggttacaaaattttgttgaagtttgttaag |
300 |
Q |
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| T |
28451013 |
taattcagttaattagttagcatgattttatgagttaaggagtttacttgt-------------taagttggttacaaaattttgttgaagtttgttaag |
28450927 |
T |
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| Q |
301 |
ttttttgtagtataa |
315 |
Q |
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||||||||||||||| |
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| T |
28450926 |
ttttttgtagtataa |
28450912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 300
Target Start/End: Complemental strand, 21080783 - 21080605
Alignment:
| Q |
126 |
ctttgaatacttgaggaacaatctaggaatggttgaagtcactaactaatgaattaaggaggtgtattaggaagt--taattcagttaattagttag--- |
220 |
Q |
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|||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||| |
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| T |
21080783 |
cttttaatacttgaggaacaagttaggcatggttgaagtcactaactaatgaatt-aggaggtgtgttagggtgttataattcagttggttagttagtta |
21080685 |
T |
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| Q |
221 |
---catgattttatgagttaaggagtttacttgttgaacaagtaaactaagttggttacaaaattttgttgaagtttgttaag |
300 |
Q |
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|| || ||| |||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| |
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| T |
21080684 |
gttcaaga--ttagaagttaagggagttacttgttgaacaagtaaactcagttagtta-gaaattttgttgaagtttgttaag |
21080605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 9507493 - 9507566
Alignment:
| Q |
121 |
agcaactttgaatacttgaggaacaatctaggaatggttgaagtcactaact-aatgaattaaggaggtgtatt |
193 |
Q |
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||||||||||| ||||||| ||| || ||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
9507493 |
agcaactttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtatt |
9507566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 27237130 - 27237205
Alignment:
| Q |
121 |
agcaactttgaatacttgaggaacaatctaggaatggttgaagtcactaactaa-tgaattaaggaggtgtattag |
195 |
Q |
| |
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||||||||||| ||||||| ||| || ||||||||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
27237130 |
agcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattag |
27237205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 32813406 - 32813479
Alignment:
| Q |
121 |
agcaactttgaatacttgaggaacaatctaggaatggttgaagtcactaactaa-tgaattaaggaggtgtatt |
193 |
Q |
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|||| |||||| ||||||| ||| || ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
32813406 |
agcagctttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtatt |
32813479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 45486064 - 45485996
Alignment:
| Q |
126 |
ctttgaatacttgaggaacaatctaggaatggttgaagtcactaactaa-tgaattaaggaggtgtatt |
193 |
Q |
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|||||| ||||||| ||| || ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
45486064 |
ctttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtatt |
45485996 |
T |
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