View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_95 (Length: 316)
Name: NF1305_low_95
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_95 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 78 - 310
Target Start/End: Complemental strand, 30164614 - 30164382
Alignment:
| Q |
78 |
caccacagacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacac |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30164614 |
caccacagacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccaaaccacccgcctagcccgattatcacacggggcgtacac |
30164515 |
T |
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| Q |
178 |
attaaacaaataaaactcttcattagattgcaaaaaacgaccatgaataaccaaaacatgctccacagaaacaatagaccacacttccacctctgctaaa |
277 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |
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| T |
30164514 |
attaaacaaataaaactcttcattagagtgcaaaaaacgaccatgaataaccaaaacatgctccacggaaacagtagaccacacttccacctccgctaaa |
30164415 |
T |
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| Q |
278 |
tcccacgcagtccacaacccaccagacgcccct |
310 |
Q |
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| T |
30164414 |
tcccacgcagtcaacaacccacctgacgcccct |
30164382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 78 - 316
Target Start/End: Complemental strand, 7660596 - 7660358
Alignment:
| Q |
78 |
caccacagacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacac |
177 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7660596 |
caccacagacacacagaagagcaccgcgtagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacac |
7660497 |
T |
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| Q |
178 |
attaaacaaataaaactcttcattagattgcaaaaaacgaccatgaataaccaaaacatgctccacagaaacaatagaccacacttccacctctgctaaa |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||| |||||| |
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| T |
7660496 |
attaaacaaataaaactcttcattagattgcaaaaaacgaccatgaataaccaaaacatgctccatataaacagtagactacacttccacctccgctaaa |
7660397 |
T |
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| Q |
278 |
tcccacgcagtccacaacccaccagacgccccttgtgaa |
316 |
Q |
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| T |
7660396 |
tcccacgcagtcaacaatccacctgacgcctcttgtgaa |
7660358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 78 - 312
Target Start/End: Complemental strand, 45567122 - 45566888
Alignment:
| Q |
78 |
caccacagacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacac |
177 |
Q |
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||||||| ||||| | | ||| ||| |||| || ||| |||||||||||||| |||||||| | |||||||||||| ||||| ||||| || || || || |
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| T |
45567122 |
caccacatacacaaacatgagtaccacgcaaaggaccaagacgcaaggataaggattcccataacacccgcctagctcgattgtcacaaggagcataaac |
45567023 |
T |
|
| Q |
178 |
attaaacaaataaaactcttcattagattgcaaaaaacgaccatgaataaccaaaacatgctccacagaaacaatagaccacacttccacctctgctaaa |
277 |
Q |
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||| |||| || |||||||||| ||||| |||||| || ||||||||||||||||||||||| | ||| || |||||||||| |||||||||| |||| |
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| T |
45567022 |
atttaacagatggaactcttcatcagatttcaaaaatcggccatgaataaccaaaacatgctcaaaggaagcagtagaccacacctccacctctgttaaa |
45566923 |
T |
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| Q |
278 |
tcccacgcagtccacaacccaccagacgccccttg |
312 |
Q |
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| T |
45566922 |
tcccacgcggtcaacaacccacctgacgcctcttg |
45566888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 120 - 312
Target Start/End: Complemental strand, 10484203 - 10484011
Alignment:
| Q |
120 |
gcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaacaaataaaactcttcattagattgcaaaaaacgacc |
219 |
Q |
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|||| ||||| |||||||| | |||| ||||||||||| ||||| || || || | ||||||||||| |||||||||||||||| || ||| ||||| |
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| T |
10484203 |
gcaaagataaggattcccataacacctgcctagcccgaaagtcacaaggagcataaatattaaacaaatggaactcttcattagatttcagaaaccgacc |
10484104 |
T |
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| Q |
220 |
atgaataaccaaaacatgctccacagaaacaatagaccacacttccacctctgctaaatcccacgcagtccacaacccaccagacgccccttg |
312 |
Q |
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||||||||| ||||||||||| | |||||| |||||||| | |||||||| ||||||||||| |||||| |||||| || ||||||||||| |
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| T |
10484103 |
atgaataactaaaacatgctctaaggaaacagtagaccacgcctccacctccgctaaatcccatgcagtcagcaacccgcctgacgccccttg |
10484011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 300
Target Start/End: Original strand, 20471745 - 20471927
Alignment:
| Q |
119 |
cgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaacaaataaaactcttcattagattgcaaaaaacgac |
218 |
Q |
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||||||||||| |||||||||| ||| ||||||||||||| ||||| || || || ||||||||||||| |||||||||||| ||| |||||| |||| |
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| T |
20471745 |
cgcaaggataaggattcccacaaaacctgcctagcccgattgtcacatggagcataaacattaaacaaatggaactcttcattaaatttcaaaaaccgac |
20471844 |
T |
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| Q |
219 |
catgaataaccaaaacatgctcca-cagaaacaatagaccacacttccacctctgctaaatcccacgcagtccacaacccacc |
300 |
Q |
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|||||||||| || |||||||| | |||||| ||||||||| |||||||| | | |||| |||||||| |||| ||||| |
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| T |
20471845 |
catgaataactaagacatgctcaaggggaaacagtagaccacatctccacctcagacatatcctacgcagtcaacaagccacc |
20471927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 119 - 312
Target Start/End: Original strand, 8719125 - 8719318
Alignment:
| Q |
119 |
cgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaacaaataaaactcttcattagattgcaaaaaacgac |
218 |
Q |
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||||| ||||| |||||||| | ||||||||||||| || ||||| || || || | |||||||| || |||||||||||||||| || ||| |||| |
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| T |
8719125 |
cgcaaagataaggattcccataacacccgcctagcctgagagtcacaaggagcataaatattaaacagatggaactcttcattagatttcagaaaccgac |
8719224 |
T |
|
| Q |
219 |
catgaataaccaaaacatgctccacagaaacaatagaccacacttccacctctgctaaatcccacgcagtccacaacccaccagacgccccttg |
312 |
Q |
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|||||||||| |||||||||| | |||||| |||||||||| |||||||| | |||||||||| || || ||||||| || ||||||||||| |
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| T |
8719225 |
catgaataactaaaacatgctttaaggaaacagtagaccacacatccacctccgttaaatcccacacattcaacaacccgcctgacgccccttg |
8719318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 29306297 - 29306343
Alignment:
| Q |
160 |
atcacacggggcgtacacattaaacaaataaaactcttcattagatt |
206 |
Q |
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|||||||||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
29306297 |
atcacacggggcatacatattgaacatataaaactcttcattagatt |
29306343 |
T |
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