View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_98 (Length: 312)
Name: NF1305_low_98
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_98 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 35070236 - 35070081
Alignment:
| Q |
83 |
cacagaccaccaaatccatctattcccaaattccgcccccgtcaatgttcatgcttaccgctatccctactaccaaaaaacagaaattgaaaaacaagtc |
182 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35070236 |
cacagaccaccaaatccatctcctcccaaattccgcccccgtcaatgttcgtccttaccgctatccctactaccaaaaaacagaaattgaaaaacaggtt |
35070137 |
T |
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| Q |
183 |
agcgaactcttatcctctggcctcattcaacccagcagcagccctttctctgctcc |
238 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
35070136 |
agcgaactattatcctctggcctcattcaacccagccgcagccctttctcttctcc |
35070081 |
T |
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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 22259991 - 22260146
Alignment:
| Q |
83 |
cacagaccaccaaatccatctattcccaaattccgcccccgtcaatgttcatgcttaccgctatccctactaccaaaaaacagaaattgaaaaacaagtc |
182 |
Q |
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|||||| |||||||||||||| | |||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22259991 |
cacagatcaccaaatccatctcctaccaaattccgcccccgtcaacgttcgtccttaccgctatccctactaccgaaaaacagaaattgaaaaacaagtc |
22260090 |
T |
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| Q |
183 |
agcgaactcttatcctctggcctcattcaacccagcagcagccctttctctgctcc |
238 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
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| T |
22260091 |
agcgaactcttatcctctggcctcattgaacccagccgcagccctttctcttctcc |
22260146 |
T |
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