View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1306-Insertion-1 (Length: 389)

Name: NF1306-Insertion-1
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1306-Insertion-1
NF1306-Insertion-1
[»] chr4 (5 HSPs)
chr4 (14-159)||(2873817-2873961)
chr4 (178-283)||(2873719-2873824)
chr4 (339-389)||(2873613-2873663)
chr4 (189-264)||(2901380-2901455)
chr4 (189-253)||(2883510-2883574)
[»] chr2 (3 HSPs)
chr2 (194-269)||(44214023-44214098)
chr2 (194-253)||(44237002-44237061)
chr2 (194-222)||(44226188-44226216)
[»] chr7 (2 HSPs)
chr7 (194-252)||(39334417-39334475)
chr7 (194-252)||(39568129-39568187)
[»] chr1 (1 HSPs)
chr1 (188-252)||(2164586-2164650)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 2873961 - 2873817
Alignment:
Q  14 aatagtattatttaccttcagcatatagtctgttatcagactttcctcttggccttcagttgaagttgcctagtatatcaaaattcattgagatgaatat 113  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873961 aatagtattatt-accttcagcatataatcggttatcagactttcctcttggccttcagttgaagttgcctagtatatcaaaattcattgagatgaatat 2873863  T
Q  114 atattattacatcaaatgctatagaaatatatagcataacgtagtt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  2873862 atattattacatcaaatgctatagaaatatatagcataatgtagtt 2873817  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 2873824 - 2873719
Alignment:
Q  178 atgtagtttctttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagcaaatctatg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873824 atgtagtttctttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagcaaatctatg 2873725  T
Q  278 catcac 283  Q
    ||||||    
T  2873724 catcac 2873719  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 2873663 - 2873613
Alignment:
Q  339 gggtgttccattgcatgtatggacatcaattttcacccataatcataatca 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873663 gggtgttccattgcatgtatggacatcaattttcacccataatcataatca 2873613  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 2901380 - 2901455
Alignment:
Q  189 ttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcaga 264  Q
    |||| ||||||||  ||||||||||||||||||||||  | ||||||||||| |||||||||||| | ||||||||    
T  2901380 ttcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttctagacaactcaga 2901455  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 2883574 - 2883510
Alignment:
Q  189 ttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttcta 253  Q
    |||||||||||||| ||||||||| ||||||||||||  | || |||||||| ||||||||||||    
T  2883574 ttctcaccttcatgaagacatcaacatctgggtctggcttaatatttgcttccttttctcttcta 2883510  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 44214023 - 44214098
Alignment:
Q  194 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagca 269  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||| | || ||||||||| | | |||||||||||    
T  44214023 accttcatgtagacatcaatatctgggtcaggcttgatatttgctaccttctctcttctagaaagctcagatagca 44214098  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 44237002 - 44237061
Alignment:
Q  194 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttcta 253  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||| | || |||||||||    
T  44237002 accttcatgtagacatcaatatctgggtcaggcttgatatttgctgccttctctcttcta 44237061  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 44226188 - 44226216
Alignment:
Q  194 accttcatgtagacatcaatatctgggtc 222  Q
    |||||||||||||||||||||||||||||    
T  44226188 accttcatgtagacatcaatatctgggtc 44226216  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 39334475 - 39334417
Alignment:
Q  194 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 252  Q
    ||||||||||| |||||||||||||| || ||  |||| ||||| ||||||||||||||    
T  39334475 accttcatgtacacatcaatatctggatcaggcttgatatttgcatctttttctcttct 39334417  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 39568129 - 39568187
Alignment:
Q  194 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 252  Q
    ||||||||||| |||||||||||||| || ||  |||| ||||| ||||||||||||||    
T  39568129 accttcatgtacacatcaatatctggatcaggcttgatatttgcatctttttctcttct 39568187  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 2164586 - 2164650
Alignment:
Q  188 tttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 252  Q
    |||||||||||||| ||| |||||| ||| || |||||| | ||||||||||| || ||||||||    
T  2164586 tttctcaccttcatataggcatcaacatcaggatctggtttaatctttgcttccttctctcttct 2164650  T

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