View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306-Insertion-2 (Length: 539)
Name: NF1306-Insertion-2
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 539
Target Start/End: Complemental strand, 26375327 - 26374796
Alignment:
| Q |
8 |
gatggaattctggaggtataattaacttcacaaggtttcatgattcaatgttttgttttgtatttcttcctgggtgtatatgtgactatacacgtattaa |
107 |
Q |
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| T |
26375327 |
gatggaattctggaggtataattaacttcacaaggttccatgattcaatgttttgttttgtatttcttcctggttgtatatgtgactatacacgtattaa |
26375228 |
T |
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| Q |
108 |
atttcaatttatgcgcgatggcaagtgtttgatttttagtaacctttacttttcagtccatctctgcatatagtggacactatcggccaacagacgacac |
207 |
Q |
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| T |
26375227 |
atttcaatttatgcgcgatggcaagtgtttgatttttagtaacctttacttttcagtccatctctgcatatagtggacactatcggccaacagacgacac |
26375128 |
T |
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| Q |
208 |
actcgataccttcttatcatatctcaaacaaaatggtgtcaatcttgatgaagtaaaggtaattgattatcttcagaacatatttatgacttaactgtag |
307 |
Q |
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| T |
26375127 |
actcgataccttcttatcatatctcaaacaaaatggtgtcaatcttgatgaagtaaaggtaattgattatcttcagaacatatttatgacttaactgtag |
26375028 |
T |
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| Q |
308 |
tattaccgtagtttttagtaggttcttagaattttttaggccaatggacgttacttcaagaagatattaaacaatgatttcatattgggcaaacttaatt |
407 |
Q |
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| T |
26375027 |
tattaccgtagtttttaataggttcttagaattttttaggccaatggacgttacttcaagaagatattaaacaatgatttcatattgggcaaacttaatt |
26374928 |
T |
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| Q |
408 |
ttgataactaatttggaaacatggtgtactatattcgtatacattttgatctcgatgaggttggtctgctagaagcatgcagaccagcgtgctaggtcct |
507 |
Q |
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| T |
26374927 |
ttgataactaatttggaaacatggtgtactatattcgtatacattttgatctcgatgaggttggtctgctagaagcatgcagaccagcgtgctaggtcct |
26374828 |
T |
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| Q |
508 |
acctttgttgctatgccggttttcgccttcta |
539 |
Q |
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| T |
26374827 |
acctttgttgctatgtcggttttcgccttcta |
26374796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 19964780 - 19964916
Alignment:
| Q |
42 |
gtttcatgattcaatgttttgttttgtatttcttcctgggtgtatatgtgactatacacgtattaaatttcaatttatgcgcgatg--gcaagtgtttga |
139 |
Q |
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| T |
19964780 |
gtttcatgattcaatgttttgttttgtatcttttcctgggtgtatatgtgactatacacaaattaaatttcaatttatatgcgatgataaaaatgtttga |
19964879 |
T |
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| Q |
140 |
tttttagtaacctttacttttcagtccatctctgcat |
176 |
Q |
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| T |
19964880 |
tttttagtaacttttacttttcagtccatctgtgcat |
19964916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 13675939 - 13675803
Alignment:
| Q |
42 |
gtttcatgattcaatgttttgttttgtatttcttcctgggtgtatatgtgactatacacgtattaaatttcaatttatgcgcgatg--gcaagtgtttga |
139 |
Q |
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| T |
13675939 |
gtttcatgattcaatgttttgttttgtatcttttcctggatgtatatgtgaatatacacaaattaaatttcaatttatgtgcgatgataaaaatgtttga |
13675840 |
T |
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| Q |
140 |
tttttagtaacctttacttttcagtccatctctgcat |
176 |
Q |
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| T |
13675839 |
tttttagtaacttttacttttcagtccatctgtgcat |
13675803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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