View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306-Insertion-3 (Length: 792)
Name: NF1306-Insertion-3
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306-Insertion-3 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 741; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 8 - 792
Target Start/End: Complemental strand, 22416071 - 22415287
Alignment:
| Q |
8 |
cacccttgatcctttatcttatccaatttttcatcaacatcatttccaaccgttggattgcaatactcatgattacgatcaactccaataggtaatgcca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416071 |
cacccttgatcctttatcttatccaatttttcatcaacatcatttccaaccgttggattgcaatactcatgattacgatcaactccaataggtaatgcca |
22415972 |
T |
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| Q |
108 |
aatcccaacacaaatcactaacacacaaaggaaaatttggatcattttcaagtctcaactctgattcagtcctattggtcccaccaaaaaatggttgacg |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415971 |
aatcccaacacaaatcactaacgcacaaaggaaaatttggatcattttcaagtctcaactctgattcagtcctattggtcccaccaaaaaatggttgacg |
22415872 |
T |
|
| Q |
208 |
caatatcaacccttggatcttcaatggctcaaaatcattcaccttttcaactacacgtaaccctgcatggtatgcaatggtagctccagcactatttccc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
22415871 |
caatatcaacccttggatcttcaatggctcaaaatcattcaccttttcaagtacacgtagccctgcatggtatgcaatggtagctccagcactattaccc |
22415772 |
T |
|
| Q |
308 |
attaggtaacacttagaatagtcaacatatttagtcaaccattcatcttgacttgatctaatcaaactcaatgcttccatagcatcatcatatgccgccg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415771 |
attaggtaacacttagaatagtcaacatatttagtcaaccattcatcttgacttgatctaatcaaactcaatgcttccatagcatcatcatatgccgccg |
22415672 |
T |
|
| Q |
408 |
gtagccggtgctccggtgcgaggcgataatctaccgaagcgacaactgcttcgacagtatcagccatatcaacacataaatcatggaagttggtggaggc |
507 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22415671 |
gtagccggtgctccggtgcgaggcgataatcgaccgaggcgacaactgcttcaacagtatccgccatatcaacacataaatcatggaagttggtggaggc |
22415572 |
T |
|
| Q |
508 |
tgcactttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaggtttgaaacatttgttgcttttttaggtaggaat |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22415571 |
tgcactttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaagtttgaaacatttgttgcttttttaggtaggaat |
22415472 |
T |
|
| Q |
608 |
aatcgaagccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaaggtgaggtgtgtggatcttcaaaat |
707 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415471 |
aaccgaagccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaaggtgaggtgtgtggatcttcaaaat |
22415372 |
T |
|
| Q |
708 |
atcgagtaagtgtatcattgggatggtggtggattttgaggagttggtaaggatcggttgtaggtggtggatgcatggtttgatt |
792 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415371 |
atcgagtaagtgtatcattgggatggtgttggattttgaggagttggtaaggatcggttgtaggtggtggatgcatggtttgatt |
22415287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 763
Target Start/End: Complemental strand, 22400231 - 22399482
Alignment:
| Q |
14 |
tgatcctttatcttatccaatttttcatcaacatcatttccaaccgttggattgcaatactcatgattacgatcaactccaataggtaatgccaaatccc |
113 |
Q |
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|||||||| |||||| | | ||||||||||||| |||| |||||| || ||||| |||||||||||| ||| | ||| ||||| ||||| || || |||| |
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| T |
22400231 |
tgatccttaatcttagcaagtttttcatcaacaccattcccaacccttagattggaatactcatgatcacggttaacaccaattggtaacgctaactccc |
22400132 |
T |
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| Q |
114 |
aacacaaatcactaacacacaaaggaaaatttggatcattttcaagtctcaactctgattcagtcctattggtcccaccaaaaaatggttgacgcaatat |
213 |
Q |
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| ||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22400131 |
acatcaaatcactaacacacaaaggaaaaacaggatcattctcaagtcttaactctgactcagtcctattggtcccaccaaaaaatggttgacgcaatat |
22400032 |
T |
|
| Q |
214 |
caacccttggatcttcaatggctcaaaatcattcaccttttcaactacacgtaaccctgcatggtatgcaatggtagctccagcactatttcccattagg |
313 |
Q |
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||||||||| || ||||| ||||||| |||||||| ||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||||||||| |
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| T |
22400031 |
caacccttgaattttcaacggctcaagatcattcatcttttcaactacacgtagtcctgcatgatacgcaattgtacctccagcactatttcccattaga |
22399932 |
T |
|
| Q |
314 |
taacacttagaatagtcaacatatttagtcaaccattcatcttgacttgatctaatcaaactcaatgcttccatagcatcatcatatgccgccggtagcc |
413 |
Q |
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|||| || ||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||| | || |
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| T |
22399931 |
aaacattttgaaaagtcaacatatttagtcaaccattcatcatcacttgacctaatcaaactcaatgcttccatagcatcatcataagccgccggcaacc |
22399832 |
T |
|
| Q |
414 |
ggtgctccggtgcgaggcgataatctaccgaagcgacaactgcttcgacagtatcagccatatcaacacataaatcatggaagttggtggaggctgcact |
513 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||||||||||||| || || ||||| ||| |||| |||| ||||| | |||||||||||||| |
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| T |
22399831 |
ggtgctccggtgcgaggcgataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaaaattgtggaacattgtggaggctgcact |
22399732 |
T |
|
| Q |
514 |
ttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaggtttgaaacatttgttgcttttttaggtaggaataatcga |
613 |
Q |
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| | || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22399731 |
tagtacaatgaagccacttccatgaaagaaaacaataagtggtagtagcttgttgtttaggtttgaaacatttgttgcttttttaggtagaaataatcga |
22399632 |
T |
|
| Q |
614 |
agccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaaggtgaggtgtgtggatcttcaaaatatcgag |
713 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||||| |
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| T |
22399631 |
agccatgtttggtttgattggttgatggtgagatctttggtgagaacagaaagagaagtgtctaatgaaggtgaggtgtgtggatcttcaagatttcgag |
22399532 |
T |
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| Q |
714 |
taagtgtatcattgggatggtggtggattttgaggagttggtaaggatcg |
763 |
Q |
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| |||||||| ||||||| ||| || | ||||||| ||||||||||||| |
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| T |
22399531 |
tgagtgtatcgttgggattgtgttgaactttgaggtattggtaaggatcg |
22399482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 22492815 - 22492748
Alignment:
| Q |
269 |
cctgcatggtatgcaatggtagctccagcactatttcccattaggtaacacttagaatagtcaacata |
336 |
Q |
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||||||||||| ||||||||||| |||||||| |||||||| || |||||||||||||| |||||||| |
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| T |
22492815 |
cctgcatggtaagcaatggtagcaccagcactttttcccataagataacacttagaataatcaacata |
22492748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 46138587 - 46138629
Alignment:
| Q |
53 |
ccaaccgttggattgcaatactcatgattacgatcaactccaa |
95 |
Q |
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| T |
46138587 |
ccaaccgttggattacaatactcatgatcacggtcaactccaa |
46138629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 267784 - 267743
Alignment:
| Q |
187 |
cccaccaaaaaatggttgacgcaatatcaacccttggatctt |
228 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||| |
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| T |
267784 |
cccaccaaaaaatggttggtgcaatatcaaccctttgatctt |
267743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 277526 - 277445
Alignment:
| Q |
147 |
gatcattttcaagtctcaactctgattcagtcctattggtcccaccaaaaaatggttgacgcaatatcaacccttggatctt |
228 |
Q |
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|||||||||| |||||||| || || | ||||| | || ||||||||||||||||| ||||||||||||||| |||||| |
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| T |
277526 |
gatcattttcgagtctcaattccgaatttgtcctttgggagccaccaaaaaatggttggtgcaatatcaaccctttgatctt |
277445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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