View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306-Insertion-4 (Length: 230)
Name: NF1306-Insertion-4
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 14771985 - 14772205
Alignment:
| Q |
8 |
tataatggattcagttaccataatagatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatata |
107 |
Q |
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| T |
14771985 |
tataatggattaagttaccataatagatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatata |
14772084 |
T |
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| Q |
108 |
cctgaagcatacttaagagatcgacctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagc |
207 |
Q |
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| T |
14772085 |
cctgaagcatacataagagatcgacctatgagtctgtggtactgcttgcaggttgtt--tcagcttcagtttttggaatgcttaaatgaggttgctcagc |
14772182 |
T |
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| Q |
208 |
agcagttacaattcggtgaaata |
230 |
Q |
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| T |
14772183 |
agcagttacaattcggtgaaata |
14772205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 15014113 - 15014323
Alignment:
| Q |
20 |
agttaccataatagatttaacaacttta-atatacaaagttaaaaggaacttaacgaacaat-taacaagttaacctggaaaatgatatacctgaagcat |
117 |
Q |
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| T |
15014113 |
agttagcatgatagattgaaaaacttaatatatacaaagtcaaaagcaatttaatgaagaaactaacaagtaaacctaaaaaataatatacctgaaacaa |
15014212 |
T |
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| Q |
118 |
acttaagagatcgacctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttaca |
217 |
Q |
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| T |
15014213 |
acataagagatcgatctatgagtctgtggtactgcttgcatgttttt--ctaccttcagtttttggaatgtttaaatgagggtgctctgcagccgttaca |
15014310 |
T |
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| Q |
218 |
attcggtgaaata |
230 |
Q |
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| T |
15014311 |
atttggtgaaata |
15014323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 17878747 - 17878933
Alignment:
| Q |
32 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatcga |
131 |
Q |
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| T |
17878747 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaatgaacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaagagatcct |
17878846 |
T |
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| Q |
132 |
cctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaatt |
220 |
Q |
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| T |
17878847 |
tttatgagcctatggaacttcttgtgtctttttc--cagcttcagttactggaatgcttaaatgagggtgctcagcagcacttacaatt |
17878933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 36878948 - 36878894
Alignment:
| Q |
168 |
cagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattcg |
222 |
Q |
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| T |
36878948 |
cagcttcagtttctggaatgcttaaatgaggatgctcggcagcagttacaattcg |
36878894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 51365227 - 51365277
Alignment:
| Q |
171 |
cttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattc |
221 |
Q |
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| T |
51365227 |
cttcagttttaggaatgcttaaatgagggtgctcagcagcggttacaattc |
51365277 |
T |
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