View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13060_high_3 (Length: 523)
Name: NF13060_high_3
Description: NF13060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13060_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 157 - 481
Target Start/End: Original strand, 40341284 - 40341608
Alignment:
| Q |
157 |
cataagcttacttgaataaactgaatgaattcgattgttgaattgaatttgaatatgaattgtatatttggctgtgcttcaggattggaggttctgatta |
256 |
Q |
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| T |
40341284 |
cataagcttacttgaataaactgaatgaattcgattgttgaattgaatttgaatatgaattgtatatttggctgtgcttcaggattggaggttctgatta |
40341383 |
T |
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| Q |
257 |
gcaccgatgaacggtttaggaattataagaatagtttgttcagtcccaagagtaaagaattggatagaggtttaaagacagaagacgagaataaacaact |
356 |
Q |
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| T |
40341384 |
gcaccgatgaacggtttaggaattataagaatagtttgttcagtcccaagagtaaagaattggatagaggattaaagacagaagacgagaataaacaact |
40341483 |
T |
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| Q |
357 |
taattctttgattaatccgtacttgagattaatttctggatattttaatcttccggctgctcttcaaacactcgagtatttgatacgtgtatacaagtga |
456 |
Q |
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| T |
40341484 |
taattctttgattaatccgtacttgagattaatttctggatattttaatcttccggctgctcttcaaacactcgagtatttgatacgtgtatacaagtga |
40341583 |
T |
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| Q |
457 |
gaactctatttgatgatttgttttg |
481 |
Q |
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| T |
40341584 |
gaactctatttgatgatttgttttg |
40341608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 40341148 - 40341242
Alignment:
| Q |
21 |
aaagcgaccgttcactcgtccttctatcttgttcgatcctaaagaagctgctgataagagtactgaatccatttacaccattgctgctcaaggta |
115 |
Q |
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| T |
40341148 |
aaagcgaccgttcactcgtccttctatcttgttcgatcctaaagaagctgctgataagagtactgaatccatttacaccattgctgctcaaggta |
40341242 |
T |
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