View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13060_high_5 (Length: 468)

Name: NF13060_high_5
Description: NF13060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13060_high_5
NF13060_high_5
[»] chr1 (9 HSPs)
chr1 (165-454)||(48125233-48125522)
chr1 (40-112)||(47134720-47134791)
chr1 (40-106)||(16300411-16300476)
chr1 (43-112)||(38894771-38894839)
chr1 (40-108)||(46626324-46626391)
chr1 (40-80)||(52306116-52306156)
chr1 (40-106)||(5426238-5426303)
chr1 (43-113)||(33075659-33075728)
chr1 (40-113)||(1367306-1367378)
[»] chr6 (5 HSPs)
chr6 (40-112)||(9981259-9981330)
chr6 (40-113)||(15045546-15045618)
chr6 (40-106)||(4107976-4108041)
chr6 (52-106)||(6969307-6969360)
chr6 (57-113)||(4897511-4897566)
[»] scaffold0009 (1 HSPs)
scaffold0009 (43-113)||(225450-225519)
[»] chr7 (12 HSPs)
chr7 (40-113)||(11840447-11840519)
chr7 (40-113)||(21600970-21601042)
chr7 (40-113)||(39651148-39651220)
chr7 (40-108)||(27737741-27737808)
chr7 (40-113)||(39276628-39276700)
chr7 (40-108)||(29684113-29684180)
chr7 (40-98)||(9143506-9143563)
chr7 (40-106)||(49146122-49146187)
chr7 (40-106)||(4848370-4848436)
chr7 (52-106)||(688085-688138)
chr7 (43-113)||(29467766-29467835)
chr7 (40-113)||(21670792-21670864)
[»] chr4 (14 HSPs)
chr4 (40-106)||(3821198-3821263)
chr4 (40-80)||(15704158-15704198)
chr4 (40-119)||(30529278-30529356)
chr4 (43-108)||(39406234-39406298)
chr4 (40-113)||(39716717-39716789)
chr4 (40-108)||(3757746-3757813)
chr4 (40-107)||(13171646-13171712)
chr4 (52-106)||(5752473-5752526)
chr4 (40-106)||(12682755-12682820)
chr4 (40-106)||(46104201-46104266)
chr4 (40-106)||(50119957-50120022)
chr4 (40-113)||(52799040-52799112)
chr4 (40-108)||(17730453-17730520)
chr4 (40-80)||(35498532-35498572)
[»] chr5 (7 HSPs)
chr5 (40-113)||(30140517-30140589)
chr5 (40-106)||(3088031-3088096)
chr5 (40-106)||(33709813-33709878)
chr5 (40-120)||(30754417-30754496)
chr5 (40-113)||(25698717-25698789)
chr5 (41-105)||(12422345-12422408)
chr5 (40-108)||(36886968-36887035)
[»] chr3 (10 HSPs)
chr3 (40-108)||(55297343-55297410)
chr3 (40-106)||(22519211-22519276)
chr3 (40-107)||(19895645-19895711)
chr3 (40-103)||(26777850-26777912)
chr3 (52-106)||(8393585-8393638)
chr3 (52-106)||(18682511-18682564)
chr3 (40-114)||(19368941-19369014)
chr3 (40-105)||(28981817-28981881)
chr3 (40-108)||(26102150-26102217)
chr3 (40-108)||(29530561-29530628)
[»] chr2 (10 HSPs)
chr2 (40-107)||(28607242-28607308)
chr2 (40-113)||(10050189-10050261)
chr2 (43-108)||(18096511-18096575)
chr2 (40-108)||(19486209-19486276)
chr2 (43-113)||(17836982-17837051)
chr2 (40-133)||(19486111-19486203)
chr2 (40-113)||(2952772-2952844)
chr2 (40-113)||(9545775-9545847)
chr2 (40-77)||(24520916-24520953)
chr2 (43-107)||(32677186-32677249)
[»] chr8 (7 HSPs)
chr8 (40-107)||(41972977-41973043)
chr8 (40-108)||(25346054-25346121)
chr8 (40-108)||(36776424-36776491)
chr8 (43-107)||(40587695-40587758)
chr8 (40-106)||(4466420-4466485)
chr8 (40-105)||(44389005-44389069)
chr8 (40-108)||(24053934-24054001)
[»] scaffold0051 (1 HSPs)
scaffold0051 (40-106)||(62084-62149)
[»] scaffold0057 (1 HSPs)
scaffold0057 (40-113)||(20579-20651)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 165 - 454
Target Start/End: Original strand, 48125233 - 48125522
Alignment:
Q  165 aagaataagacatactcctgatcctgatccaattcagaacatagagtaactaactgttgttagttgaatagcaagttgtaataagttaacttgtatcgca 264  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48125233 aagaataagacatactcttgatcctgatccaattcagaacatagagtaactaactgttgttagttgaatagcaagttgtaataagttaacttgtatcgca 48125332  T
Q  265 agtaatttatagtataaatacaatgtatatgtgtaacaactaactcatagcataaatacaatatatgtgtataattatctcaataacactcatcgttgaa 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48125333 agtaatttatagtataaatacaatgtatatgtgtaacaactaactcatagcataaatacaatatatgtgtataattagctcaataacactcatcgttgaa 48125432  T
Q  365 tacgaatcaattcatcacattcgtagttcgtaaatcctttctttctctcttgcatagagggtaacaaaaaataacattgcacatgaatat 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48125433 tacgaatcaattcatcacattcgtagttcgtaaatcctttctttctctcttgcatagaggttaacaaaaaataacattgcacatgaatat 48125522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 47134791 - 47134720
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttt 112  Q
    ||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||| |||||    
T  47134791 ctcaaccaattagtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaatggacattaccttt 47134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 16300476 - 16300411
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||||||||||||||||||| ||||||||| || | || ||||||||||||| |||||||    
T  16300476 ctcaaccaattagtaatttaccaaattgccccttata-ggagcaaaatggtaaattcaagggacatt 16300411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 38894839 - 38894771
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttt 112  Q
    ||||||| ||||  |||||||||| |||||||||||||  || |||||||||||||||||||||| ||||    
T  38894839 aaccaataagtagattaccaaattgccccttataggggcaaa-atggtaaattcaatggacatttacttt 38894771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 46626324 - 46626391
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| |||||||||    
T  46626324 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatttc 46626391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 52306156 - 52306116
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggg 80  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  52306156 ctcaaccaattagtaatttatcaaattgccccttatagggg 52306116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 5426303 - 5426238
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||| ||||||||||||||| |||||| ||  ||| || |||||||| ||||||||||||    
T  5426303 ctcaaccaatttgtaatttaccaaattgccccttcta-agggcaaaatggtaaaatcaatggacatt 5426238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 33075659 - 33075728
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    ||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| ||||||||| ||||    
T  33075659 aaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatttctttta 33075728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 1367378 - 1367306
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||| ||||| | |||||||||||||| ||||| ||| |||| || ||||||||||||| ||||||||| ||||    
T  1367378 ctcagccaataattaatttaccaaattgcccctaata-ggggcaaaatggtaaattcaaaggacatttctttta 1367306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 9981259 - 9981330
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttt 112  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||    
T  9981259 ctcaaccaattagcaatttaccaaattgccccttata-ggggtaaaatggtaaattcaatgaacatttccttt 9981330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 15045546 - 15045618
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||| |||| ||||||||||||||||||| ||||| |||| || ||||||||||||| ||||||||| ||||    
T  15045546 ctcaacaaatttgtaatttaccaaattaccctttata-ggggcaaaatggtaaattcaagggacatttctttta 15045618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 4108041 - 4107976
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||| ||||||||||||||| ||||| ||| |||| || |||||||| ||||||||||||    
T  4108041 ctcaaccaatttgtaatttaccaaattgcccctcata-ggggaaaaatggtaaaatcaatggacatt 4107976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 6969307 - 6969360
Alignment:
Q  52 gtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  6969307 gtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatt 6969360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 4897511 - 4897566
Alignment:
Q  57 ttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||||||| ||||||||| |||| || ||||||||||||| ||||||||| ||||    
T  4897511 ttaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatttctttta 4897566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 225519 - 225450
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||| ||||    
T  225519 aaccaattagtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaatggacatttctttta 225450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 11840447 - 11840519
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||||||||| |||||||||||||| ||||||||| |||| || ||||||||||||||||||||||| ||||    
T  11840447 ctcaaccaattaataatttaccaaattgccccttata-ggggcaaaatggtaaattcaatggacatttctttta 11840519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 21600970 - 21601042
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||||||||| |||||||||||||| ||||||||| |||| || ||||||||||||||||||||||| ||||    
T  21600970 ctcaaccaattaataatttaccaaattgccccttata-ggggcaaaatggtaaattcaatggacatttctttta 21601042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 39651148 - 39651220
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    ||||||||||||||||||||||||||| ||||| ||| |||| || ||||||||||||| ||||||||| ||||    
T  39651148 ctcaaccaattagtaatttaccaaattgcccctaata-ggggcaaaatggtaaattcaaaggacatttctttta 39651220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 27737741 - 27737808
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||||| |||| ||||    
T  27737741 ctcaaccaattagtaatttaccaaattatcctttata-ggggtaaaatggtaaattcaagggacttttc 27737808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 39276700 - 39276628
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||| |||| ||||||||||||||||||| ||||| |||| || ||||||||||||| ||||||||| ||||    
T  39276700 ctcaacaaatttgtaatttaccaaattaccctttata-ggggcaaaatggtaaattcaagggacatttctttta 39276628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 29684113 - 29684180
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||||||||  |||||||||| ||||||||| ||||||| ||||||||||||| | |||||||    
T  29684113 ctcaaccaattagtagattaccaaattgccccttata-ggggtaaaatggtaaattcaaggcacatttc 29684180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 9143563 - 9143506
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaa 98  Q
    |||||| |||||||||||||||||||| ||||||||| |||| || |||||||||||||    
T  9143563 ctcaacaaattagtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaa 9143506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 49146122 - 49146187
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||| ||||||||||||||| ||||| ||| |||| || |||||||| ||||||||||||    
T  49146122 ctcaaccaatttgtaatttaccaaattgcccctcata-ggggcaaaatggtaaaatcaatggacatt 49146187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 4848436 - 4848370
Alignment:
Q  40 ctcaaccaatta-gtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    |||||||||||  ||||||||||||||||||||| ||| |||| || |||||||| ||||||||||||    
T  4848436 ctcaaccaattttgtaatttaccaaattacccctcata-ggggcaaaatggtaaaatcaatggacatt 4848370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 688138 - 688085
Alignment:
Q  52 gtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  688138 gtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaaaggacatt 688085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 29467835 - 29467766
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    ||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| ||||||||| ||||    
T  29467835 aaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatttctttta 29467766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 21670792 - 21670864
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||| |||| |||||||||||||||| || ||||| |||| || || |||||||||| ||||||||| ||||    
T  21670792 ctcaacaaatttgtaatttaccaaattatcctttata-ggggcaaaatagtaaattcaagggacatttctttta 21670864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 3821198 - 3821263
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  3821198 ctcaaccaattagtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatt 3821263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 15704198 - 15704158
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggg 80  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  15704198 ctcaaccaattagtaatttaccaaatttccccttatagggg 15704158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 30529278 - 30529356
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttcctttatatata 119  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| ||| ||||| ||||||||||    
T  30529278 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggatatttcttttatatata 30529356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 39406234 - 39406298
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    ||||||| ||||  |||||||||||||||||||||||| ||| ||||||||||||| | |||||||    
T  39406234 aaccaataagtagattaccaaattaccccttataggggctaa-atggtaaattcaaggaacatttc 39406298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 39716717 - 39716789
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||||||| | |||||||||||||| ||||| ||| |||| || ||||||||||||| ||||||||| ||||    
T  39716717 ctcaaccaataattaatttaccaaattgcccctaata-ggggcaaaatggtaaattcaaaggacatttctttta 39716789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 3757813 - 3757746
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||||| |||||||    
T  3757813 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaatgaacatttc 3757746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 13171712 - 13171646
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacattt 107  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| ||||||||    
T  13171712 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacattt 13171646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 5752526 - 5752473
Alignment:
Q  52 gtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  5752526 gtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatt 5752473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 12682755 - 12682820
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    |||||||||||  |||||||||||||| ||||| ||| |||| || |||||||| ||||||||||||    
T  12682755 ctcaaccaatttataatttaccaaattgcccctcata-ggggcaaaatggtaaaatcaatggacatt 12682820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 46104266 - 46104201
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||| ||||||||||||||| ||||| ||  |||| || |||||||| ||||||||||||    
T  46104266 ctcaaccaatttgtaatttaccaaattgcccctcat-tggggcaaaatggtaaaatcaatggacatt 46104201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 50119957 - 50120022
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  50119957 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatt 50120022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 52799112 - 52799040
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||| ||||| | |||||||||||||| ||||| ||| ||||||| |||||||||| || ||||||||| ||||    
T  52799112 ctcagccaataattaatttaccaaattgcccctaata-ggggtaaaatggtaaatttaaaggacatttctttta 52799040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 17730520 - 17730453
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||||||||  |||||||||| ||||||||| || | || ||||||||||||| | |||||||    
T  17730520 ctcaaccaattagtagattaccaaattgccccttata-ggagcaaaatggtaaattcaaagcacatttc 17730453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 35498532 - 35498572
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggg 80  Q
    |||||||||||||||||||||||||||  || |||||||||    
T  35498532 ctcaaccaattagtaatttaccaaattgtcctttatagggg 35498572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 30140589 - 30140517
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    ||||||||||||||||||||||||||||||| | ||| |||| || ||||||||||||| ||||||||| ||||    
T  30140589 ctcaaccaattagtaatttaccaaattacccttaata-ggggcaaaatggtaaattcaaaggacatttctttta 30140517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 3088031 - 3088096
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    |||||||||||| |||||||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  3088031 ctcaaccaattaataatttaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatt 3088096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 33709813 - 33709878
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    |||||||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||||| |||||||    
T  33709813 ctcaaccaattactaatttaccaaattgccctttata-ggggtaaaatggtaaattcaagggacatt 33709878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 30754496 - 30754417
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttcctttatatatag 120  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| ||||||||| ||| |||||||    
T  30754496 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaaaggacatttcttttctatatag 30754417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 25698717 - 25698789
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||||||| | |||||||||||||| ||||| ||| |||| || ||||||||||||| ||||||||| ||||    
T  25698717 ctcaaccaataattaatttaccaaattgcccctaata-ggggcaaaatggtaaattcaaaggacatttctttta 25698789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 12422345 - 12422408
Alignment:
Q  41 tcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacat 105  Q
    ||||||||||||||  |||||||||| ||||||||| |||| || |||||||| |||| ||||||    
T  12422345 tcaaccaattagtagattaccaaattgccccttata-ggggcaaaatggtaaaatcaaaggacat 12422408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 36886968 - 36887035
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    ||||| |||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| |||||||||    
T  36886968 ctcaatcaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatttc 36887035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 55297343 - 55297410
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||||| |||||||||||||||||| ||||| ||||||| ||||||||||| | |||||||||    
T  55297343 ctcaaccaattaataatttaccaaattaccctttata-ggggtaaaatggtaaattcgagggacatttc 55297410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 22519276 - 22519211
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    |||||||||||| |||||||| ||||| ||||||||| |||| || |||||||||||||||||||||    
T  22519276 ctcaaccaattaataatttactaaattgccccttata-ggggcaaaatggtaaattcaatggacatt 22519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 19895645 - 19895711
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacattt 107  Q
    |||||||||||| |||||||||||||| ||| |||||  ||| || ||||||||||||||||||||||    
T  19895645 ctcaaccaattactaatttaccaaattgccctttata-agggcaaaatggtaaattcaatggacattt 19895711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 26777850 - 26777912
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggac 103  Q
    ||||||||||| ||||||||||||||| ||||| ||| |||| || |||||||| |||||||||    
T  26777850 ctcaaccaatttgtaatttaccaaattgcccctcata-ggggcaaaatggtaaaatcaatggac 26777912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 8393638 - 8393585
Alignment:
Q  52 gtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  8393638 gtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaaaggacatt 8393585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 18682564 - 18682511
Alignment:
Q  52 gtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||||||| ||||||||| |||| || ||||||||||||| |||||||    
T  18682564 gtaatttaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatt 18682511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 19368941 - 19369014
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttcctttat 114  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || |||||||| |||| ||||||||| |||||    
T  19368941 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaaatcaagggacatttcttttat 19369014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 28981817 - 28981881
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacat 105  Q
    ||||||||||||||   |||||||||| ||||||||| |||| || ||||||||||||| ||||||    
T  28981817 ctcaaccaattagttgattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacat 28981881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 26102150 - 26102217
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||| || |  ||||||||||||| |||||| |||| || ||||||||||||| |||||||||    
T  26102150 ctcaaccaataagcagattaccaaattacctcttata-ggggcaaaatggtaaattcaaaggacatttc 26102217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 29530561 - 29530628
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||| ||||  |||||||||| ||||||||| |||  || ||||||||||||| |||||||||    
T  29530561 ctcaaccaataagtagattaccaaattgccccttata-gggacaaaatggtaaattcaagggacatttc 29530628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 28607308 - 28607242
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacattt 107  Q
    ||||||||||| ||||||||||||||| ||||||||| |||  || ||||||||||||||||||||||    
T  28607308 ctcaaccaatttgtaatttaccaaattgccccttata-gggacaaaatggtaaattcaatggacattt 28607242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 10050189 - 10050261
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||||||||||||||||||| |||||| ||||| ||| |||| || ||||||||||||| ||||||||| ||||    
T  10050189 ctcaaccaattagtaatttatcaaattgcccctaata-ggggcaaaatggtaaattcaaaggacatttctttta 10050261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 18096575 - 18096511
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    ||||||||| |||||| ||||||||||||||||| |||| || ||||||||||||| |||||||||    
T  18096575 aaccaattaataatttgccaaattaccccttata-ggggcaaaatggtaaattcaaaggacatttc 18096511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 19486276 - 19486209
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| |||||||||    
T  19486276 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatttc 19486209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 17837051 - 17836982
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    ||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| ||||||||| ||||    
T  17837051 aaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatttctttta 17836982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 19486111 - 19486203
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggaca-tttcctttatatatagtaataatagataa 133  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||| ||||||||||||| | |||| |||||||| |||||| ||||||||    
T  19486111 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatgataaattcaatggatattttcttttatata-agtaattatagataa 19486203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 2952844 - 2952772
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||| ||||| | |||||||||||||| ||||| ||| |||| || ||||||||||||| ||||||||| ||||    
T  2952844 ctcagccaataattaatttaccaaattgcccctaata-ggggcaaaatggtaaattcaaaggacatttctttta 2952772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 9545775 - 9545847
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||| ||||| | |||||||||||||| ||||| ||| |||| || ||||||||||||| ||||||||| ||||    
T  9545775 ctcagccaataattaatttaccaaattgcccctaata-ggggcaaaatggtaaattcaaaggacatttctttta 9545847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 24520953 - 24520916
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatag 77  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  24520953 ctcaaccaattagtaatttaccaaattgctccttatag 24520916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 32677186 - 32677249
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacattt 107  Q
    ||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| ||||||||    
T  32677186 aaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacattt 32677249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 41973043 - 41972977
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacattt 107  Q
    |||||||||||||||  |||||||||| ||||||||| |||| || ||||||||||||| ||||||||    
T  41973043 ctcaaccaattagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacattt 41972977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 25346121 - 25346054
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||| ||||  |||||||||| |||||||||| ||  || |||||||||||||||||||||||    
T  25346121 ctcaaccaataagtagattaccaaattgccccttatagaggcaaa-atggtaaattcaatggacatttc 25346054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 36776491 - 36776424
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||| |||||||||    
T  36776491 ctcaaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaagggacatttc 36776424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 40587695 - 40587758
Alignment:
Q  43 aaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacattt 107  Q
    ||||||| ||||  |||||||||| ||||||||| |||| || ||||||||||||||||||||||    
T  40587695 aaccaataagtagattaccaaattgccccttata-ggggcaaaatggtaaattcaatggacattt 40587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 4466420 - 4466485
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||| ||||||||||||||| |||||  ||  |||||| |||||||| ||||||||||||    
T  4466420 ctcaaccaatttgtaatttaccaaattgcccctccta-agggtaaaatggtaaaatcaatggacatt 4466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 44389005 - 44389069
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacat 105  Q
    |||||||||||| ||  ||||||||||||||||||||  ||| || ||||||||||||| ||||||    
T  44389005 ctcaaccaattaatagattaccaaattaccccttata-agggaaaaatggtaaattcaagggacat 44389069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 24054001 - 24053934
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttc 108  Q
    |||||||||| ||||  |||||||||| ||||||||| || | || ||||||||||||| |||||||||    
T  24054001 ctcaaccaataagtagattaccaaattgccccttata-ggagcaaaatggtaaattcaagggacatttc 24053934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 62149 - 62084
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatt 106  Q
    ||||||||||| ||||||||||||||| ||||| ||| |||| || |||||||| ||||||||||||    
T  62149 ctcaaccaatttgtaatttaccaaattgcccctcata-ggggcaaaatggtaaaatcaatggacatt 62084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 20579 - 20651
Alignment:
Q  40 ctcaaccaattagtaatttaccaaattaccccttatagggggtaatatggtaaattcaatggacatttccttta 113  Q
    |||| ||||| | |||||||||||||| ||||| ||| |||| || ||||||||||||| ||||||||| ||||    
T  20579 ctcagccaataattaatttaccaaattgcccctaata-ggggcaaaatggtaaattcaaaggacatttctttta 20651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University