View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13060_low_1 (Length: 850)
Name: NF13060_low_1
Description: NF13060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13060_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 5e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 11111607 - 11111352
Alignment:
| Q |
4 |
ctaaataatcatccagtgtcccctcattttcttccaattcatctcccgctgt----------gtcatgtggtcaacaattttgcttccaaataatttctg |
93 |
Q |
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| T |
11111607 |
ctaaataatcgtcaagtgtctcatcattttcttccaattcatctcccccggtaaagaccacaatcatgtggtcaacaattttgcttccaaataatttctg |
11111508 |
T |
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| Q |
94 |
cacgctgcgcagagcattttcttcttcctcggtgaaccgtgttctaacagagaatactaaaatgacagcatggattccatccttggccaaatcaatgcac |
193 |
Q |
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| T |
11111507 |
cacgttacgcagggcattttcttcttcctcggtgaatcgtgttctaacagagaatactacaatgacagcatgaattccatccttggccaaatcaatgcac |
11111408 |
T |
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| Q |
194 |
ttgactatttctttgccaagaagttcaattccaaccgaaaaatcaaataatcctgt |
249 |
Q |
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| T |
11111407 |
ttgattatttctttgccaagaagttcaattccaacagaaaaatcaaatagtcctgt |
11111352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 11128555 - 11128371
Alignment:
| Q |
65 |
tcaacaattttgcttccaaataatttctgcacgctgcgcagagcattttcttcttcctcggtgaaccgtgttctaacagagaatactaaaatgacagcat |
164 |
Q |
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| T |
11128555 |
tcaacaattttgcttccaaataatttctgcacgctacgcagagcactctcttcttcctcagtaaatcgtgttctaacagagaatactacaatcaaggcat |
11128456 |
T |
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| Q |
165 |
ggattccatccttggccaaatcaatgcacttgactatttctttgccaagaagttcaattccaaccgaaaaatcaaataatcctgt |
249 |
Q |
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| T |
11128455 |
ggattccatcctttgccaaatcaatgcacttgactatttctttcccaagtagttcaattccaaccgaaaaatcaaataatcctgt |
11128371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 625 - 841
Target Start/End: Complemental strand, 11111309 - 11111107
Alignment:
| Q |
625 |
cacaaactcatttaacaaccaatttacacaccgattataaaatcgg-ttgctaaataggtcgctagctatggaggctgaattaattcgatcattcaattg |
723 |
Q |
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|||||||||||||||||||||||||| |||| |||| |||||| | || ||||||||||| ||||||||||| |||||||||||||||| |||||||| |
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| T |
11111309 |
cacaaactcatttaacaaccaatttagacacggattctaaaatttgctttctaaataggtc--tagctatggagactgaattaattcgatccttcaattg |
11111212 |
T |
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| Q |
724 |
gtcgataaatagtgaatttttagtagtgctaatgtaattcaccaaaaactacctatgttagcatgtatttacctggactatcaataacattaacagtctg |
823 |
Q |
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| T |
11111211 |
ttcgataaatagtgaaattttagcagtgc-----tatttcaccaaatactacat--------atgtatttacctggactatcaataacattaacagtctg |
11111125 |
T |
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| Q |
824 |
tccatcgttcatctcact |
841 |
Q |
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| T |
11111124 |
tccatcgttcatctcact |
11111107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 11077460 - 11077312
Alignment:
| Q |
64 |
gtcaacaattttgcttccaaataatttctgcacgctgcgcagagcattttcttcttcctcggtgaaccgtgttctaacagagaatactaaaatgacagca |
163 |
Q |
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||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||| | || |||| ||||||||| || || | || || ||| |
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| T |
11077460 |
gtcaacaatcttgcttccaaataatgtctgcaagctgcgtagagcattttcttcttcctcactaaatcgtgatctaacagataacaccacaaggatggca |
11077361 |
T |
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| Q |
164 |
tggattccatccttggccaaatcaatgcacttgactatttctttgccaa |
212 |
Q |
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||||| ||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
11077360 |
tggataccatccttggcaaagtcaatgcacttgactatttctttcccaa |
11077312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 11089472 - 11089324
Alignment:
| Q |
64 |
gtcaacaattttgcttccaaataatttctgcacgctgcgcagagcattttcttcttcctcggtgaaccgtgttctaacagagaatactaaaatgacagca |
163 |
Q |
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||||| ||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||| | || |||| ||| ||||| || || | || || ||| |
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| T |
11089472 |
gtcaaaaatcttgcttccaaataatgtctgcaagctgcacagagcattttcttcttcctcgctaaatcgtgatctgacagataacaccacaaggatggca |
11089373 |
T |
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| Q |
164 |
tggattccatccttggccaaatcaatgcacttgactatttctttgccaa |
212 |
Q |
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|| || ||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
11089372 |
tgaataccatccttggcaaagtcaatgcacttgactatttctttcccaa |
11089324 |
T |
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