View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13060_low_11 (Length: 227)

Name: NF13060_low_11
Description: NF13060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13060_low_11
NF13060_low_11
[»] chr1 (12 HSPs)
chr1 (47-211)||(5442486-5442651)
chr1 (1-47)||(5442405-5442451)
chr1 (1-47)||(5040572-5040618)
chr1 (1-47)||(8773307-8773353)
chr1 (1-47)||(28908152-28908198)
chr1 (6-47)||(49945002-49945043)
chr1 (3-47)||(17342895-17342939)
chr1 (8-47)||(34813989-34814028)
chr1 (47-82)||(52432458-52432493)
chr1 (5-47)||(21304453-21304495)
chr1 (3-47)||(28277035-28277079)
chr1 (3-47)||(50267435-50267479)
[»] chr8 (10 HSPs)
chr8 (47-91)||(33190826-33190870)
chr8 (1-47)||(29730892-29730938)
chr8 (1-47)||(33190905-33190951)
chr8 (1-47)||(38252434-38252480)
chr8 (47-84)||(37219685-37219722)
chr8 (1-41)||(21587342-21587382)
chr8 (1-47)||(5392114-5392160)
chr8 (1-47)||(44790418-44790464)
chr8 (47-91)||(33925018-33925062)
chr8 (1-45)||(45425550-45425594)
[»] chr7 (12 HSPs)
chr7 (1-47)||(11616627-11616673)
chr7 (47-92)||(7425793-7425838)
chr7 (1-47)||(7425873-7425920)
chr7 (1-47)||(5724704-5724749)
chr7 (1-47)||(36117727-36117773)
chr7 (1-47)||(38181870-38181916)
chr7 (2-47)||(30463082-30463127)
chr7 (1-46)||(47454069-47454114)
chr7 (47-87)||(5083393-5083433)
chr7 (3-47)||(5083468-5083512)
chr7 (47-91)||(26938509-26938553)
chr7 (3-47)||(33584630-33584674)
[»] chr5 (14 HSPs)
chr5 (1-47)||(8692815-8692861)
chr5 (1-47)||(35646086-35646132)
chr5 (47-92)||(42575555-42575600)
chr5 (1-47)||(3725251-3725297)
chr5 (1-47)||(33012419-33012465)
chr5 (1-47)||(39008197-39008243)
chr5 (47-91)||(8369618-8369662)
chr5 (1-47)||(7613772-7613818)
chr5 (1-47)||(8369693-8369739)
chr5 (1-47)||(11099474-11099520)
chr5 (1-47)||(33988265-33988311)
chr5 (1-47)||(42575635-42575681)
chr5 (3-47)||(858402-858446)
chr5 (56-92)||(8692734-8692770)
[»] chr2 (16 HSPs)
chr2 (47-92)||(28572353-28572398)
chr2 (1-47)||(565154-565200)
chr2 (1-47)||(2882050-2882096)
chr2 (1-47)||(3100465-3100511)
chr2 (1-47)||(28527029-28527075)
chr2 (1-47)||(36396454-36396500)
chr2 (1-46)||(28572273-28572318)
chr2 (6-47)||(33602222-33602263)
chr2 (1-49)||(435072-435120)
chr2 (47-86)||(5211880-5211919)
chr2 (1-40)||(23685024-23685063)
chr2 (1-47)||(18181209-18181255)
chr2 (1-47)||(28108371-28108417)
chr2 (1-47)||(28301499-28301545)
chr2 (3-47)||(8550638-8550682)
chr2 (3-47)||(36155580-36155624)
[»] chr6 (5 HSPs)
chr6 (1-47)||(31265844-31265890)
chr6 (3-47)||(3604596-3604640)
chr6 (3-47)||(14306237-14306281)
chr6 (3-47)||(14312644-14312688)
chr6 (1-47)||(15081488-15081534)
[»] chr4 (16 HSPs)
chr4 (1-47)||(283473-283519)
chr4 (1-47)||(4360404-4360450)
chr4 (1-43)||(18849759-18849801)
chr4 (47-91)||(16493215-16493259)
chr4 (7-47)||(30568734-30568774)
chr4 (1-41)||(39976392-39976432)
chr4 (1-47)||(9093758-9093804)
chr4 (1-47)||(27977212-27977258)
chr4 (1-47)||(41436546-41436592)
chr4 (5-47)||(49448910-49448952)
chr4 (1-47)||(54729480-54729526)
chr4 (6-47)||(17237113-17237154)
chr4 (47-91)||(18849676-18849720)
chr4 (6-46)||(25902459-25902499)
chr4 (3-47)||(28974373-28974417)
chr4 (1-45)||(42544274-42544318)
[»] chr3 (9 HSPs)
chr3 (1-47)||(11251123-11251169)
chr3 (1-47)||(1772102-1772148)
chr3 (1-47)||(9017866-9017912)
chr3 (1-47)||(26134699-26134745)
chr3 (1-47)||(36097651-36097697)
chr3 (1-47)||(39866549-39866595)
chr3 (3-47)||(5245479-5245523)
chr3 (47-75)||(54122157-54122185)
chr3 (3-47)||(54458305-54458349)
[»] scaffold0321 (1 HSPs)
scaffold0321 (3-47)||(9548-9592)
[»] scaffold0006 (1 HSPs)
scaffold0006 (3-40)||(229890-229927)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 5442486 - 5442651
Alignment:
Q  47 tgtgaaatgaaaaaa-tggctcagctaatttgggacggaggaagtaacttttaggtataattgattttgaaatagaatcaattataaagttgggagccaa 145  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5442486 tgtgaaatgaaaaaaatgactcagctaatttgggacggaggaagtaacttttaggtataattgattttgaaatagaatcaattataaagttgggagccaa 5442585  T
Q  146 acataacaatctgtggtcaaaaacacatgtttagctaactcagacgtgattctaatgggtataaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5442586 acataacaatctgtggtcaaaaacacatgtttagctaactcagacgtgattctaatgggtataaac 5442651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5442405 - 5442451
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5442405 agtggagaatgcactaatacttaacaagataacttaaaaccattttt 5442451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5040618 - 5040572
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||    
T  5040618 agtggagaatgcatcaatacttaacaagatcacctaaaaccattttt 5040572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8773307 - 8773353
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||    
T  8773307 agtggagaatgcaccaatacttaacaagagcacttaaaactattttt 8773353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28908152 - 28908198
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||    
T  28908152 agtggagaatgcactaatacttaacaagagtacttaaaatcattttt 28908198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 49945002 - 49945043
Alignment:
Q  6 agaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  49945002 agaatgcacaaatacttaacaagagcacttaaaaccattttt 49945043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 17342895 - 17342939
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||| |||||||||||| | |||||||||||||||||    
T  17342895 tggagaatgcaccaatacttaacaaaaacacttaaaaccattttt 17342939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 34813989 - 34814028
Alignment:
Q  8 aatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  34813989 aatgcactaatacttaacaagaacacttaaaactattttt 34814028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 52432458 - 52432493
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacg 82  Q
    ||||||| ||||||||||||||||||||||||||||    
T  52432458 tgtgaaaagaaaaaatggctcagctaatttgggacg 52432493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 21304453 - 21304495
Alignment:
Q  5 gagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||| |||| |||||||||||||||||| |||||||    
T  21304453 gagaatgcactgatacataacaagatcacttaaaatcattttt 21304495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 28277079 - 28277035
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||| |||||||||||||  |||||||||| ||||||    
T  28277079 tggagaatgcaccaatacttaacaagtgcacttaaaactattttt 28277035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 50267479 - 50267435
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||| |||||||||||||  |||||||||| ||||||    
T  50267479 tggagaatgcaccaatacttaacaagtgcacttaaaactattttt 50267435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 33190870 - 33190826
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagta 91  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  33190870 tgtgaaaagaaaaaatggctcagctaatttgggacggaggaagta 33190826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29730938 - 29730892
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| |||||||||||| ||||    
T  29730938 agtggagaatgcaccaatacttaacaagaacacttaaaaccactttt 29730892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33190951 - 33190905
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||    
T  33190951 agtggagaatgcattaatacttaacaagaacacttaaaatcattttt 33190905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38252480 - 38252434
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||    
T  38252480 agtggagaatgcactaatacttaacaagtgcacttaaaactattttt 38252434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 37219722 - 37219685
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacgga 84  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  37219722 tgtgaaatgaaaaaatgactcagctaatttgggacgga 37219685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21587342 - 21587382
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaacc 41  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  21587342 agtggagaatgcaccaatacttaacaagagcacttaaaacc 21587382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5392114 - 5392160
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| ||||||| |||| | |||||||||||||||||    
T  5392114 agtggagaatgcaccaatacttgacaaaagcacttaaaaccattttt 5392160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44790464 - 44790418
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||||    
T  44790464 agtggagaatgcaccaatacttaacaagtgcacttaaaactattttt 44790418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 33925062 - 33925018
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagta 91  Q
    ||||||| ||||||||||||||||||||| |||| ||||| ||||    
T  33925062 tgtgaaaagaaaaaatggctcagctaattcgggatggagggagta 33925018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45425550 - 45425594
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattt 45  Q
    |||||| ||||||  |||||||||||||| |||||||||||||||    
T  45425550 agtggaaaatgcatcaatacttaacaagagcacttaaaaccattt 45425594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11616627 - 11616673
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  11616627 agtggagaatgcaccaatacttaacaagagcacttaaaaccattttt 11616673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 7425838 - 7425793
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagtaa 92  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  7425838 tgtgaaatgaaaaaatggctcagctaattcgggacggagggagtaa 7425793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7425920 - 7425873
Alignment:
Q  1 agtggagaatgcactaatacttaa-caagatcacttaaaaccattttt 47  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  7425920 agtggagaatgcaccaatacttaaacaagaacacttaaaaccattttt 7425873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5724749 - 5724704
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||    
T  5724749 agtggagaatgcactaatacttaacaag-gcacttaaaactattttt 5724704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36117727 - 36117773
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||||    
T  36117727 agtggagaatgcacaaatacttaacaagtgcacttaaaactattttt 36117773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38181916 - 38181870
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||| ||||||| |||||||| ||||| |||||||||||||||||    
T  38181916 agtggaaaatgcaccaatacttaccaagaacacttaaaaccattttt 38181870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 30463082 - 30463127
Alignment:
Q  2 gtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||| |||||||||||||  |||||||||| ||||||    
T  30463082 gtggagaatgcaccaatacttaacaagtgcacttaaaactattttt 30463127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47454069 - 47454114
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccatttt 46  Q
    |||||||||||||| |||||||||||||  |||||||||| |||||    
T  47454069 agtggagaatgcaccaatacttaacaagtgcacttaaaactatttt 47454114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 5083433 - 5083393
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggagga 87  Q
    ||||||| |||||||||| |||||||||| |||||||||||    
T  5083433 tgtgaaaagaaaaaatggttcagctaattcgggacggagga 5083393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 5083512 - 5083468
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||| |||||| |||||||||||||| |||||||||| ||||||    
T  5083512 tggagtatgcaccaatacttaacaagagcacttaaaactattttt 5083468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 26938553 - 26938509
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagta 91  Q
    |||||||||||||||||| ||| |||||| |||||||||| ||||    
T  26938553 tgtgaaatgaaaaaatggttcaactaattcgggacggagggagta 26938509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 33584630 - 33584674
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||| ||| |||||||||||| | |||||||||||||||||    
T  33584630 tggagaatacaccaatacttaacaatagcacttaaaaccattttt 33584674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8692861 - 8692815
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  8692861 agtggagaatgcaccaatacttaacaagaacacttaaaaccattttt 8692815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35646132 - 35646086
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  35646132 agtggagaatgcaccaatacttaacaagatcacttaaaatcattttt 35646086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 42575600 - 42575555
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagtaa 92  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  42575600 tgtgaaatgaaaaaatggctcagctaattcgggacggagggagtaa 42575555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3725251 - 3725297
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||| | |||||||||||||||||    
T  3725251 agtggagaatgcaccaatacttaacaatagcacttaaaaccattttt 3725297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33012419 - 33012465
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  33012419 agtggtgaatgcacaaatacttaacaagagcacttaaaaccattttt 33012465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39008197 - 39008243
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||    
T  39008197 agtggagaatgaaccaatacttaacaagagcacttaaaaccattttt 39008243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 8369662 - 8369618
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagta 91  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||    
T  8369662 tgtgaaatgaaaaaatggttcagctaattcgggacggagggagta 8369618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7613772 - 7613818
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||||    
T  7613772 agtggagaatgcaccaatacttaacaagtgcacttaaaactattttt 7613818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8369739 - 8369693
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| || ||||||| ||||||    
T  8369739 agtggagaatgcaccaatacttaacaagagcatttaaaacaattttt 8369693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11099520 - 11099474
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||| | |||||||||| ||||||    
T  11099520 agtggagaatgcaccaatacttaacaaaaacacttaaaactattttt 11099474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33988265 - 33988311
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||| ||| |||||||||||| | |||||||||||||||||    
T  33988265 agtggagaatacaccaatacttaacaaaaacacttaaaaccattttt 33988311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42575681 - 42575635
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||| ||| |||||||| ||||| |||||||||||||||||    
T  42575681 agtggagaatacaccaatacttaccaagagcacttaaaaccattttt 42575635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 858402 - 858446
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||| || |||| |||||||||| ||||||||||||||||    
T  858402 tggagaatgtaccaatatttaacaagataacttaaaaccattttt 858446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 8692770 - 8692734
Alignment:
Q  56 aaaaaatggctcagctaatttgggacggaggaagtaa 92  Q
    |||||||||||||||||||| |||||||||| |||||    
T  8692770 aaaaaatggctcagctaattcgggacggagggagtaa 8692734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 28572353 - 28572398
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagtaa 92  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  28572353 tgtgaaatgaaaaaatggctcagctaattcgggacggagggagtaa 28572398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 565154 - 565200
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  565154 agtggagaatgcaccaatacttaacaagaacacttaaaatcattttt 565200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2882050 - 2882096
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  2882050 agtggagaatgcaccaatacttaacaagagcacttaaaatcattttt 2882096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3100465 - 3100511
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||    
T  3100465 agtggagaatgcagcaatacttaacaagatcacttaaaatcattttt 3100511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28527029 - 28527075
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||    
T  28527029 agtgaagaatgcacgaatacttaacaagagcacttaaaaccattttt 28527075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36396500 - 36396454
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||    
T  36396500 agtggagaatgcactaatactcatcaagagcacttaaaaccattttt 36396454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28572273 - 28572318
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccatttt 46  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||||    
T  28572273 agtggagaatgcaccaatacttaacaagagcacttaaaatcatttt 28572318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 33602263 - 33602222
Alignment:
Q  6 agaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  33602263 agaatgcactaatacataacaagagcacttaaaaccattttt 33602222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 435120 - 435072
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccatttttgt 49  Q
    ||||||||||||||||||| ||||||||  |||||||||| ||||||||    
T  435120 agtggagaatgcactaatatttaacaagtgcacttaaaactatttttgt 435072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 5211919 - 5211880
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggagg 86  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  5211919 tgtgaaatgaaaaaatggctcggctaattcgggacggagg 5211880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23685024 - 23685063
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaac 40  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  23685024 agtggagaatgcactaatacttaacaaaaacacttaaaac 23685063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18181255 - 18181209
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| ||||| |||||| | |||||||||||||||||    
T  18181255 agtggagaatgcaccaatacataacaaaagcacttaaaaccattttt 18181209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28108417 - 28108371
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||||    
T  28108417 agtggagaatgcaccaatacttaacaagtgcacttaaaactattttt 28108371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28301499 - 28301545
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||  || |||||||||||||| |||||||||||||||||    
T  28301499 agtggagaatagaccaatacttaacaagagcacttaaaaccattttt 28301545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8550682 - 8550638
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||| ||||||| |||||| |||||||||||| ||||    
T  8550682 tggagaatgcacaaatacttgacaagaacacttaaaaccactttt 8550638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 36155580 - 36155624
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||| ||| |||||||||||||| ||||||||| |||||||    
T  36155580 tggagaatacaccaatacttaacaagagcacttaaaatcattttt 36155624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31265844 - 31265890
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||    
T  31265844 agtggagaatgcaccaatacttaacaagagcacttaaaactattttt 31265890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 3604640 - 3604596
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||    
T  3604640 tggagaatgcaccaatacttaacaagagaacttaaaaccattttt 3604596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 14306281 - 14306237
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||| |||||||||||| | |||||||||||||||||    
T  14306281 tggagaatgcaccaatacttaacaaaaacacttaaaaccattttt 14306237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 14312688 - 14312644
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||| |||||||||||| | |||||||||||||||||    
T  14312688 tggagaatgcaccaatacttaacaaaaacacttaaaaccattttt 14312644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15081488 - 15081534
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||||    
T  15081488 agtggagaatgcacaaatacttaacaagtgcacttaaaactattttt 15081534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 283519 - 283473
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||    
T  283519 agtggagaatgcacaaatacttaacaagagcacttaaaacaattttt 283473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4360450 - 4360404
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||| | |||||||||||||||||    
T  4360450 agtggagaatgcaccaatacttaacaaaagcacttaaaaccattttt 4360404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18849801 - 18849759
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccat 43  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  18849801 agtggagaatgcaccaatacttaacaagagcacttaaaaccat 18849759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 16493259 - 16493215
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagta 91  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||||    
T  16493259 tgtgaaatgaaaaaatggctcagctaattcgggaaggagggagta 16493215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 30568734 - 30568774
Alignment:
Q  7 gaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  30568734 gaatgcactaatacttaacaataacacttaaaaccattttt 30568774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39976432 - 39976392
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaacc 41  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  39976432 agtggagaatgcaccaatacttaacaagagcacttaaaacc 39976392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9093804 - 9093758
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||||    
T  9093804 agtggagaatgcacaaatacttaacaagtgcacttaaaactattttt 9093758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27977212 - 27977258
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||| | ||||||||| |||||||    
T  27977212 agtggagaatgcaccaatacttaacaaaaacacttaaaatcattttt 27977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41436546 - 41436592
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| ||||| |||||| | |||||||||||||||||    
T  41436546 agtggagaatgcaccaatacataacaaaagcacttaaaaccattttt 41436592  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 49448910 - 49448952
Alignment:
Q  5 gagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||| ||||||| |||||| |||||||||||||||||    
T  49448910 gagaatgcacaaatacttgacaagagcacttaaaaccattttt 49448952  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 54729526 - 54729480
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||| |||||||||||||||| | |||||||||| ||||||    
T  54729526 agtggagaatacactaatacttaacaaaaacacttaaaactattttt 54729480  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 17237113 - 17237154
Alignment:
Q  6 agaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  17237113 agaatccactaatacttaacaaaatcacttaaaactattttt 17237154  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 18849720 - 18849676
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatttgggacggaggaagta 91  Q
    |||||||| ||||||||||| |||||||| |||||||||| ||||    
T  18849720 tgtgaaataaaaaaatggcttagctaattcgggacggagggagta 18849676  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 25902499 - 25902459
Alignment:
Q  6 agaatgcactaatacttaacaagatcacttaaaaccatttt 46  Q
    |||||||||||||||||||||| | |||| |||||||||||    
T  25902499 agaatgcactaatacttaacaaaaacactcaaaaccatttt 25902459  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 28974373 - 28974417
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||| |||||||||||| | |||||||||||| ||||    
T  28974373 tggagaatgcaccaatacttaacaacaacacttaaaaccactttt 28974417  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42544274 - 42544318
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattt 45  Q
    ||||||||||  ||||||||||||||||| ||||||||| |||||    
T  42544274 agtggagaatagactaatacttaacaagagcacttaaaatcattt 42544318  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11251169 - 11251123
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  11251169 agtggagaatgcaccaatacttaacaagagcacttaaaatcattttt 11251123  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1772148 - 1772102
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||  || |||||||||||||| |||||||||||||||||    
T  1772148 agtggagaatataccaatacttaacaagaacacttaaaaccattttt 1772102  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9017866 - 9017912
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||||||| |||||||||||| | |||||||||| ||||||    
T  9017866 agtggagaatgcaccaatacttaacaaaagcacttaaaactattttt 9017912  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26134745 - 26134699
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||  ||||||||||||||||| |||||||||| ||||||    
T  26134745 agtggagaatagactaatacttaacaagagcacttaaaacaattttt 26134699  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36097697 - 36097651
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||||  |||||||||||||  ||||||||||||||||    
T  36097697 agtggagaatgcaccgatacttaacaagagtacttaaaaccattttt 36097651  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39866595 - 39866549
Alignment:
Q  1 agtggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||||| ||| |||||||||||| |||||||||||| ||||||    
T  39866595 agtggagaatacaccaatacttaacaaaatcacttaaaactattttt 39866549  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 5245479 - 5245523
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||| ||| |||||||||||||| |||||||||| ||||||    
T  5245479 tggagaatacaccaatacttaacaagagcacttaaaactattttt 5245523  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 54122185 - 54122157
Alignment:
Q  47 tgtgaaatgaaaaaatggctcagctaatt 75  Q
    |||||||||||||||||||||||||||||    
T  54122185 tgtgaaatgaaaaaatggctcagctaatt 54122157  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 54458349 - 54458305
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    ||||||||||||  ||||||||||| ||||||||||| |||||||    
T  54458349 tggagaatgcacccatacttaacaaaatcacttaaaatcattttt 54458305  T

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Target: scaffold0321 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 9592 - 9548
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaaccattttt 47  Q
    |||||||| || ||||||||||||||| |||||||||||||||||    
T  9592 tggagaatacattaatacttaacaagagcacttaaaaccattttt 9548  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 229890 - 229927
Alignment:
Q  3 tggagaatgcactaatacttaacaagatcacttaaaac 40  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  229890 tggagaatgcaccaatacttaacaagagcacttaaaac 229927  T

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