View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13060_low_2 (Length: 542)
Name: NF13060_low_2
Description: NF13060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13060_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 535
Target Start/End: Complemental strand, 33193888 - 33193369
Alignment:
| Q |
15 |
aagaatcataggtgaggactgcaacagaatatgatgcttaaatatggttagagagtgctttcataacacccactagaca-------ctagaaagcatata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33193888 |
aagaatcataggtgaggactgcaacagaatatgatgctta----------gagagtgctttcataacacccactagacagtagacactagaaagcatata |
33193799 |
T |
|
| Q |
108 |
tgaattctgaaaactcaccctcaaccattacaataatgacttgaagagcannnnnnnn-cactactagtagtatcaaagagtatagc------atataga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |
|
|
| T |
33193798 |
tgaattctgaaaactcaccctcaaccattacaataatgacttgaagagcatttttttttcactactagtagtatcaaagagtatagctatagcatataaa |
33193699 |
T |
|
| Q |
201 |
aatagcaaaggaaatgtgggttgctccaataccacctactaaatgactatatatatgcaaaaataaattggttttgttgaataacgtgaatccaacgcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33193698 |
aatagcaaaggaaatgtgggttgctccaataccacctactaaatgactatatatatgcaaaaataaattggttttgttgaataacgtgaatccaacgcga |
33193599 |
T |
|
| Q |
301 |
ttcccatataagtaccactaattaatcacatcacaacacaacacaacattaaacattgtcgtgacatgtttttaggtatgttatccaaaagtgtaattgc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33193598 |
ttcccatataagtaccactaattaatcacatcacaacacaaca-----ttaaacatggtcgtgacatgtttttaggtatgttatccaaaagtgtaattgc |
33193504 |
T |
|
| Q |
401 |
atgcatatgatatgacacagctactactagtactaagcttagatccattcccacactactctgtcccaagacaaacaggtagtaggttttggtttcccaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33193503 |
atgcatatgatatgacacagctactactagtactaagcttagatctattcccacactactctgtcccaagacaaacaggtagtaggttttggtttcccaa |
33193404 |
T |
|
| Q |
501 |
gatgttcttttccaacttgcgttatcttcttctca |
535 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
33193403 |
gatgttcttttccaacttgcgtcatcttcttctca |
33193369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University