View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13060_low_4 (Length: 498)
Name: NF13060_low_4
Description: NF13060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13060_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 4144358 - 4144843
Alignment:
| Q |
1 |
tagttggtttatgttcatgtcagtttttgtccaagttatatccatgcattatgtttaatctctcctcttctcattgtttaagtatacactgctaaatagt |
100 |
Q |
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| T |
4144358 |
tagttggtttatgttcatgtcagtttttgtccaagttatatccatgcattatgtttaatctcttctcttctcattgtttaactatacactgctaaatagt |
4144457 |
T |
|
| Q |
101 |
---aacatatagtaaaaaattaatttacaatatataacactctgctataattaattacaaatatatcagtttaaaatatgcatcatgcatatgcttgcat |
197 |
Q |
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| T |
4144458 |
agtaacatatagtaaaagattaatttacaatatataaaactctgctataattaattaaaaatatatcagtttaaaatatgcatcatgcatgtgcttgcat |
4144557 |
T |
|
| Q |
198 |
atacttgagcaacacattcactcaaatgttttgcatagatcctattgagttattttcatcgtacaagagatttaatgattttattatgtaagtttctatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4144558 |
atacttgagcaacacattcactcaaatgttttgcatagatcccattgagttattttcatcgtacaagagagttaatgattttattatgtaagtttctatt |
4144657 |
T |
|
| Q |
298 |
ttagtttttgtcttacactttcgaaaaatgtggcatgtttcatatgaattcatcttttggttgagcaagattctaaaactcttgcagcatatagaaaatc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144658 |
ttagtttttgtcttacactttcgaaaaatgtggcatgtttcatatgaattcatcttttggttgagcaagattctaaaactcttgcagcatatagaaaatc |
4144757 |
T |
|
| Q |
398 |
caaactatgcaagtgtatattattattctttaaaattccaatccctctgaaaaagtatgagtgattatcgttagagcattgtagtt |
483 |
Q |
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| T |
4144758 |
caaactatgcaagtgtatattattattctttaaaattccaatccctctgaaaaagtataagtgattatcgttagagcattgtagtt |
4144843 |
T |
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