View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_high_15 (Length: 569)
Name: NF13061_high_15
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 14847245 - 14847799
Alignment:
| Q |
1 |
taagggatggaagaacttgatattttgcataatggcattgctttaggcataaagaaagctatat--catacatggataaaccctatctctaatcagtaat |
98 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
14847245 |
taagggatgaaagaactttatattttgcataatggcattgttttagacataaagaaagctatatatcatacatggataaaccctatctctaattagtaat |
14847344 |
T |
|
| Q |
99 |
aaacctttgcatgaagtgtcagctcactagtaagatttaagagtttgaccttgtaactttaagagaatgagttcaaactttctatgagacaattataaaa |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
14847345 |
aaacctttgcatgaagtgtcagttcactagtaagatttaagaatttgaccttgtaattttaagagaatgagttcaaactttttaagagacaattataaaa |
14847444 |
T |
|
| Q |
199 |
tagtctttatatagtgtcagtttaataaataatagttttttctttctcgannnnnnng-ataaataataacaaatttaaagttcgtgaccactttattan |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14847445 |
tagtctttatatagtgtcagtttaataaataatagttttttctttctcgatttttttttataaataataataaatttaaagttcgtgaccactttattat |
14847544 |
T |
|
| Q |
298 |
nnnnnngggtgaactcatgggtattttccaactcaaagtatgacctaatctagagttacaaacatctatttgaggagttgatctctctcaacaaaatttc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14847545 |
ttttttgggtgaactcatgggtattttccaactcaaagtatgacctaatctagagttacaaacatctatttgaggagttgatctctctcaacaaaatttc |
14847644 |
T |
|
| Q |
398 |
tatcttatacatttgtctgagattgaatatccggtcacatcttaaatgagtttcgttgtatagaaaagttcgattttcatattttacaaacatctattta |
497 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14847645 |
tatcttatacatttgtctgagattgaatctccggtcacatcttaaatgagtttcgttgtatagaaaagttcgattttcatattttacaaacatctattta |
14847744 |
T |
|
| Q |
498 |
aagggttgatttatcttaacaaactatctattttacacactagccttcatctcta |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14847745 |
aagggttgatttatcttaacaaactatctattttacacactagccttcatctcta |
14847799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 5620617 - 5620572
Alignment:
| Q |
136 |
taagagtttgaccttgtaactttaagagaatgagttcaaactttct |
181 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
5620617 |
taagagtttgaccttgtaactgtaagagaaggagttcaaagtttct |
5620572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University