View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_high_2 (Length: 884)
Name: NF13061_high_2
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 791; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 11 - 866
Target Start/End: Original strand, 29282351 - 29283206
Alignment:
| Q |
11 |
cacagacaaagaagatatcattgtataatatcctaagtaagaaagactaccctattcaattctcccatccttccatcaatacaatgaaattgtttttggg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
29282351 |
cacagacaaagaagatatcattgtataatatcctaagtaagaaagactaccctattcaattctcccatccttccatcaatacaatgaaattgtgtttagg |
29282450 |
T |
|
| Q |
111 |
ctgtagccatggttggcttgcattggtggaagatagcaatgccataactctggtgaatccttttaagagtagggtagctcccattagtctgccacctctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
29282451 |
ctgtagccatggttggcttgcattggtggatgataacaatgccataactctagtgaatccttttaagtgtagtatagctcccattagtctgccacctctc |
29282550 |
T |
|
| Q |
211 |
aaatctctcaaaaaggttaccttgtctgctgacccctttacaagcccaagtgattatgtggttgcagtgatttacaattttggttctctcgctttcaaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282551 |
aaatctctcaaaaaggttaccttgtctgctgacccctttacaagcccaagtgattatgtggttgcagtgatttacaattttggttctctcgctttcaaaa |
29282650 |
T |
|
| Q |
311 |
gaccaagccagtcattttggattcgtgtaaacacaaatgaattttctttcactgatgttgtattttataaaggcctgatatttgttgatagcacagatac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282651 |
gaccaagccagtcattttggattcgtgtaaacacaaatgaattttctttcactgatgttgtattttataaaggcctgatatttgttgatagcacagatac |
29282750 |
T |
|
| Q |
411 |
cattgtatccttcaagttgaacaatccttcttctgatgactcatttgatcctaatttttcctactatgagaagatggctagtactccatannnnnnncct |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29282751 |
cattgtatccttcaagttgaacaatccttcttctgatgactcatttgatcctaatttttcctactatgagaagatggctagtactccatatttttttcct |
29282850 |
T |
|
| Q |
511 |
ccagaactatattcttatgggcgtacttataatgggcgtgcttattttgtgaaatcattgaccggagacatatggatgatgaaaagattcttaatcggcg |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282851 |
ccagaactatattcttatgggcgtacttataatgggcgtgcttattttgtgaaatcattgaccagagacatatggatgatgaaaagattcttaatcggca |
29282950 |
T |
|
| Q |
611 |
gagatttaatcaaaccctgcattttcaaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcatttt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282951 |
gagatttaatcaaaccctgcattttcaaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcatttt |
29283050 |
T |
|
| Q |
711 |
atttgtcggaagtgttggtgattcaatatctgtgccagcctctgctttctccaagttggaaaaggattcaatttattttgttaatggtttagagacagat |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29283051 |
atttgtcggaagtgttggtgattcaatatctgtgccagcctctgctttctccaagttggaaaaggattcaatttattttgttaatggtttagagacagat |
29283150 |
T |
|
| Q |
811 |
atctatatctttaatgtgaaggatggaagcgttcagagaccaccatcagtgctttc |
866 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29283151 |
atctatatctttaatgtgaaggatggaagcgttcagagaccaccttcagtgctttc |
29283206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 105 - 866
Target Start/End: Original strand, 29287896 - 29288648
Alignment:
| Q |
105 |
tttgggctgtagccatggttggcttgcattggtggaagatagcaatgccataactctggtgaatccttttaagagtagggtagctcccattagtctgcca |
204 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||| ||| |||||| |||||||| ||||||||||||||||| || |||||||||||||||| ||| |
|
|
| T |
29287896 |
tttgggttgtagccatggttggcttgcactagtggataataacaatgctataactctagtgaatccttttaagagcagtatagctcccattagtctacca |
29287995 |
T |
|
| Q |
205 |
cctctcaaatc------tctcaaaaaggttaccttgtctgctgacccctttacaagcccaagtgattatgtggttgcagtgatttacaattttggttctc |
298 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29287996 |
cctctcgaatccagatctcttgaaaaggttaccttgtctgatgaccccattacaagcccaagtgattatgtggttgcagtgatttacaattttagttctc |
29288095 |
T |
|
| Q |
299 |
tcgctttcaaaagaccaagccagtcattttggattcgtgtaaacacaaatgaattttctttcactgatgttgtattttataaaggcctgatatttgttga |
398 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
29288096 |
tcgctttcaaaagaccaagccaatcattttggattcgtgtaaacacaaatgaattttctttcactggtgttgtattttataaaggcctgatatttgctga |
29288195 |
T |
|
| Q |
399 |
tagcacagataccattgtatccttcaagttgaacaatccttcttctgatgactcatttgatcctaatttttcctactatgagaagatggctagtactcca |
498 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
29288196 |
taacacagataccattgtatccttcaagctgaacaatccttcttctgatgactcatttgatcctaattttgcctactatgagaagatggctagtacacca |
29288295 |
T |
|
| Q |
499 |
tannnnnnncctccagaactatattcttatgggcgtacttataatgggcgtgcttattttgtgaaatcattgaccggagacatatggatgatgaaaagat |
598 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29288296 |
---atttggtttccagaacaatattattatggg---------------cgtgcttattttgtgaaatcattgaccggagacatatggatgatgagaagat |
29288377 |
T |
|
| Q |
599 |
tcttaatcggcggagatttaatcaaaccctgcattttcaaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttgga |
698 |
Q |
| |
|
|||||| ||| | |||| |||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
29288378 |
tcttaaccggaaaaaatttgatcagaccctacgttttcaaattggaactggatgcccagagtggaaaacttgaacagatgaacaaacttgagagtttgga |
29288477 |
T |
|
| Q |
699 |
agacagcattttatttgtcggaagtgttggtgattcaatatctgtgccagcctctgctttctccaagttggaaaaggattcaatttattttgttaa---t |
795 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
29288478 |
agacaacattttatttgtcggaagtgttggtgattccatttctgtgccggcctctgctttctccaagttggaaaaggattcaatttatgttgttaatggt |
29288577 |
T |
|
| Q |
796 |
ggtttagagacagatatctatatctttaatgtgaaggatggaagcgttcagagaccaccatcagtgctttc |
866 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29288578 |
ggtttagagatagatatctatatctataatatgaaagatggaagcgttcagagaccaccttcagtgctttc |
29288648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 29269982 - 29270467
Alignment:
| Q |
18 |
aaagaagatatcattgtataatatcctaagtaagaaagactaccctattcaattctcccatccttccatcaatacaatgaaattgtttttgggctgtagc |
117 |
Q |
| |
|
||||| || |||||| |||| ||||| |||| |||||| ||||||||||| || |||||||||||||||| || || ||| | ||| || |||||| |
|
|
| T |
29269982 |
aaagatgaaatcattatatagtatcccaagtgcgaaagagtaccctattcagttatcccatccttccatcattaaaagtaaaacatgtttaggttgtagc |
29270081 |
T |
|
| Q |
118 |
catggttggcttgcattggtggaagatagcaatgccataactctggtgaatccttttaagagtagggtagctcccattagtctgccacctctcaaatctc |
217 |
Q |
| |
|
||||||||||||||| | ||||| | | ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||| |||||| |
|
|
| T |
29270082 |
catggttggcttgcactagtggataaaaacaatgccataactctagtgaatccttttaagagcagtatagctcccattagtctgccacatctcgaatctc |
29270181 |
T |
|
| Q |
218 |
tcaaaaaggttaccttgtctgctgacccctttacaagcccaagtgattatgtggttgcagtgatttacaattttggttctctcgctttcaaaagaccaag |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29270182 |
tcaacaaggttaccttgtctgctgaccccattacaagcccaagtgattatgtggttgcagcgatttacaattttggttctctcgctttcaaaagagcaag |
29270281 |
T |
|
| Q |
318 |
ccagtcattttggattcgtgtaaacacaaatgaattttctttcactgatgttgtattttataaaggcctgatatttgttgatagc--ac-agataccatt |
414 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||| || |||||| || ||| || ||| |||| |
|
|
| T |
29270282 |
ccagtctttttggattcgtgcagacacaaatgaattttctttcactaatgttgtattttatgaaggcttggtatttgcggacagcgaacaagacttcatt |
29270381 |
T |
|
| Q |
415 |
gtatccttcaagttgaacaatccttcttctgatgactcatttgatcctaatttttcctactatgagaagatggctagtactccata |
500 |
Q |
| |
|
||||||||||| || ||||||||| ||| |||||||||| |||||| ||||||| | ||| ||||||||| |||| ||||||||| |
|
|
| T |
29270382 |
gtatccttcaaattaaacaatcctccttgtgatgactcaattgatcttaattttacttaccttgagaagatagctattactccata |
29270467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 636 - 789
Target Start/End: Complemental strand, 28612268 - 28612118
Alignment:
| Q |
636 |
caaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaagtgttggtgattca |
735 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
28612268 |
caaattggaactggatgtccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcggaa---ttggtgattca |
28612172 |
T |
|
| Q |
736 |
atatctgtgccagcctctgctttctccaagttggaaaaggattcaatttatttt |
789 |
Q |
| |
|
|| ||||||||||||||| | ||||||||| ||||| ||||| ||||||||| |
|
|
| T |
28612171 |
atttctgtgccagcctcttgtcactccaagttagaaaaagattcgatttatttt |
28612118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 223 - 387
Target Start/End: Complemental strand, 28612672 - 28612508
Alignment:
| Q |
223 |
aaggttaccttgtctgctgacccctttacaagcccaagtgattatgtggttgcagtgatttacaattttggttctctcgctttcaaaagaccaagccagt |
322 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||| ||||| ||| |||||||||| | ||| ||| |
|
|
| T |
28612672 |
aaggttaccttgtctgctgaccccattacaagcccaaatgattatgtcgttgcagccatttacggctttgggcgtcttgctttcaaaacagcaaaccaac |
28612573 |
T |
|
| Q |
323 |
cattttggattcgtgtaaacacaaatgaattttctttcactgatgttgtattttataaaggcctg |
387 |
Q |
| |
|
||||||||||||| ||| ||| ||| || |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28612572 |
cattttggattcgagtagacaaaaaagagttttctttcaatgatgttgtattttataaaggcctg |
28612508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 29279375 - 29279541
Alignment:
| Q |
11 |
cacagacaaagaagatatcattgtataatatcctaagtaagaaagactaccctattcaattctcccatccttccatcaatacaatgaaattgtttttg-- |
108 |
Q |
| |
|
||||||| ||||||| ||| ||||||| ||| |||||| ||||||| |||||||||||||| |||||||||||||||| | || ||| ||| |||| |
|
|
| T |
29279375 |
cacagacgaagaagagatcgttgtatagtattctaagtgagaaagagtaccctattcaattatcccatccttccatcattgaaagtaaaatgtgtttggc |
29279474 |
T |
|
| Q |
109 |
-ggctgtagccatggttggcttgcattggtggaagatagcaatgccataactctggtgaatcctttt |
174 |
Q |
| |
|
|| ||||||||||||||||||||||| || || |||| ||||| ||||||||| |||||||||||| |
|
|
| T |
29279475 |
cggttgtagccatggttggcttgcattagtagacgataacaatgtcataactctagtgaatcctttt |
29279541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 551 - 789
Target Start/End: Original strand, 29270500 - 29270741
Alignment:
| Q |
551 |
cttattttgtgaaatcattgaccggagacatatggatgatgaaaagattcttaatcggcggaga-----tttaat-caaaccctgcattttcaaattgga |
644 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||| | | | || || ||||| || | |||||||| |||| |
|
|
| T |
29270500 |
cttattttgtgaaatcattgactggagacacatggatggtgaaaagatgtttaatcgacccacacaatcttacatacaaactctacgttttcaaaatgga |
29270599 |
T |
|
| Q |
645 |
actggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaagtgttggtgattcaatatctgtg |
744 |
Q |
| |
|
| |||| |||||||| |||||| | ||||| || || |||||||||||||| || ||| ||||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
29270600 |
aatggacgcccagagcggaaaagttgaacaaataaaaaaacttgagagtttagagaacaacattttatttgtcggaa---tcggtgattcaatttctgtg |
29270696 |
T |
|
| Q |
745 |
ccagcctctgctttctccaagttggaaaaggattcaatttatttt |
789 |
Q |
| |
|
||||| || |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
29270697 |
tcagccgcttgtttctcaaagtttgaaaaggattcaatttatttt |
29270741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 491
Target Start/End: Original strand, 28621669 - 28621861
Alignment:
| Q |
302 |
ctttcaaaagaccaagccagtcattttggattcgtgtaaacacaaatgaattttctttcactgatgttgtattttataaaggcctgatatttgttgatag |
401 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| | || || || ||||| | ||||||||||||||||||| |||||| || |||||| ||| || |
|
|
| T |
28621669 |
ctttcaaaagagcaagccaaccattttggattcatttattagcacatcaatttgatatcactgatgttgtattttacaaaggcttggtatttgctgacag |
28621768 |
T |
|
| Q |
402 |
cacag---ataccattgtatccttcaagttgaacaatccttcttctgatgactcatttgatcctaatttttcctactatgagaagatggctag |
491 |
Q |
| |
|
|| | ||||| ||||||||||||| ||||||||| ||| ||||||||||| ||| ||||||||| | |||||||||||||| ||||| |
|
|
| T |
28621769 |
tgaaggagacgccattatatccttcaagttcaacaatcctccttgtgatgactcatatgaccctaattttacttactatgagaagatagctag |
28621861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 632 - 721
Target Start/End: Original strand, 29275448 - 29275537
Alignment:
| Q |
632 |
ttttcaaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaa |
721 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||| | ||||| || ||||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
29275448 |
ttttcaaattggaactggacgcccagagcgaaaaagttgaacaaatcaacaaacttgagagtttggaaagcaacattttatttgttggaa |
29275537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 636 - 789
Target Start/End: Original strand, 28615438 - 28615591
Alignment:
| Q |
636 |
caaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaagtgttggtgattca |
735 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| | ||| ||||||| ||| ||||||||| ||||| |||||||||| || || | |||| ||||| |
|
|
| T |
28615438 |
caaattgaaactggacaccaagagtggaaaacttgtacaaatgaacatgcttaagagtttgggagacaacattttatttatcagatattgtggtaattca |
28615537 |
T |
|
| Q |
736 |
atatctgtgccagcctctgctttctccaagttggaaaaggattcaatttatttt |
789 |
Q |
| |
|
| |||||| | |||||| |||||||||||| |||| |||||| |||||||| |
|
|
| T |
28615538 |
ttttctgtgtctgcctcttgtttctccaagttaaaaaaagattcagtttatttt |
28615591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 660 - 721
Target Start/End: Original strand, 28623327 - 28623388
Alignment:
| Q |
660 |
tggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaa |
721 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||||| |||||| ||||| |||| |
|
|
| T |
28623327 |
tggaaaacttgaacaaatgaacaaacttaagagtttggaagacaacattttttttgttggaa |
28623388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 28621613 - 28621667
Alignment:
| Q |
223 |
aaggttaccttgtctgctgacccctttacaagcccaagtgattatgtggttgcag |
277 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||| ||||||||| ||||||| |
|
|
| T |
28621613 |
aaggttaccttgtctgctgaccccatttcaagtccaaatgattatgtcgttgcag |
28621667 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 598
Target Start/End: Original strand, 28615353 - 28615394
Alignment:
| Q |
557 |
ttgtgaaatcattgaccggagacatatggatgatgaaaagat |
598 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
28615353 |
ttgtgaaatcattgaatggagacatatggatggtgaaaagat |
28615394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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