View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_22 (Length: 534)
Name: NF13061_high_22
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Original strand, 1741185 - 1741689
Alignment:
| Q |
17 |
aatcacaaggctgacgggagatacatctgcacttcacacactatcaacacacgagatttggtggagagattgaagagtatatatcccaactacaggtacc |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1741185 |
aatcacaaggcagacgggagatacatctgcacttcacacactatcaacacacgagatttggtggagagattgaagagtatatatcccaactacaagtacc |
1741284 |
T |
|
| Q |
117 |
ctacgaagtaagcttcagtttctaaatcaatctctaaatttaaatattatcagtaatattagtaatatcaagatatacatgaaatatgtaagaaatgtga |
216 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1741285 |
ctacgaagtaagcttcagtttctaaatcaacctctaaatttaaatattatccgtaatattaataatatcaagatatacatgaaatatgtaagaaatgtga |
1741384 |
T |
|
| Q |
217 |
aagataagagaaattgttattaacagaaaaataaagaagtcattaattagtgaggagatcatctgttaaggaaattcttgtgagatatcaatagttgtat |
316 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||| |
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| T |
1741385 |
atgataagagaaattgttcttaacagaaaaataaagaagtcattaattagtgaggagatcatcttttaaggaagttcttgtgagataacaataattgtat |
1741484 |
T |
|
| Q |
317 |
cagagaaatcgttgagtcaagagaacaacgaaggaaaaattgcaagtaatgttgttcgatggagtacttt-agagtcaagcttaatagttgctttgtagc |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||| |
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| T |
1741485 |
cagagaaatcgttgagtcaagagaaaaacgaaggaaaaattgcaagtaatgttgctcgatggagtactttcagtgtcaagtttaatagttgctttgtagc |
1741584 |
T |
|
| Q |
416 |
attgaaacctcaggttgaaggtgtgtccggtgtctgacatcaacacgatactgacacatgtgtttgaattcaataattccgttttttcaaattctcattg |
515 |
Q |
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| |||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1741585 |
ttcaaaacctcaggttgacgttgtgtccgatgtctgacatcaacacaatactgacacatgtgtttgaattcaataattccgttttttcaaattctcattg |
1741684 |
T |
|
| Q |
516 |
gtgtc |
520 |
Q |
| |
|
||||| |
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|
| T |
1741685 |
gtgtc |
1741689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 2009110 - 2008895
Alignment:
| Q |
17 |
aatcacaaggctgacgggagatacatctgcacttcacacactatcaacacacgagatttggtggagagattgaagagtatatatcccaactacaggtacc |
116 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
2009110 |
aatcacgaggcagacgggagatacatctgcacttcacacgctatcgtcacacgcgatttggtggagagattgaagggtatatatccaaactacaagtacc |
2009011 |
T |
|
| Q |
117 |
ctacgaagtaagcttcagtttc--------------taaatcaatctctaaatttaaatattatcagtaatattagtaatatcaagatatacatgaaata |
202 |
Q |
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||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||| |
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| T |
2009010 |
ctacgaagtaagcttcatattctaaagtggtagtcataaatcaagctctaaatttaaatattttcagtcatattaataatatcaagatatatatgaaata |
2008911 |
T |
|
| Q |
203 |
tgtaagaaatgtgaaa |
218 |
Q |
| |
|
|| ||||||||||||| |
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| T |
2008910 |
tgcaagaaatgtgaaa |
2008895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 30711667 - 30711709
Alignment:
| Q |
414 |
gcattgaaacctcaggttgaaggtgtgtccg-gtgtctgacat |
455 |
Q |
| |
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| T |
30711667 |
gcattgaaacctcaggttgaaggcgtgtccgagtgtctgacat |
30711709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 26221395 - 26221192
Alignment:
| Q |
18 |
atcacaaggctgacgggagatacatctgcacttcacacactatcaacacacgagatttggtggagagattgaagagtatatatcccaactacaggtaccc |
117 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
26221395 |
atcacaaggcagacgggagatacatcttcacttcacacactatcatcacacaagatttggtggagagattgaagagtatatatccaaactacaagtaccc |
26221296 |
T |
|
| Q |
118 |
tacgaagtaagcttcagtttc--------------taaatcaatctctaaatttaaatattatcagtaatattagtaatatcaagatatacatgaaatat |
203 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||| |||||| ||||| || | ||||||| |
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| T |
26221295 |
tacgaagtaagcttcattttctaaagtagtagccataaaccaacctctaaatttaaatattatcagtaatattaataatattaagatgtataagaaatat |
26221196 |
T |
|
| Q |
204 |
gtaa |
207 |
Q |
| |
|
|||| |
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|
| T |
26221195 |
gtaa |
26221192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 16567382 - 16567338
Alignment:
| Q |
433 |
aaggtgtgtccggtgtctgacatcaacacgatactgacacatgtg |
477 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
16567382 |
aaggtgtgtccggtgtttgacaccaacacgatactgacacatgtg |
16567338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 477
Target Start/End: Original strand, 9381345 - 9381378
Alignment:
| Q |
444 |
ggtgtctgacatcaacacgatactgacacatgtg |
477 |
Q |
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| T |
9381345 |
ggtgtctgatatcaacacgatactgacacatgtg |
9381378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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