View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_high_26 (Length: 522)
Name: NF13061_high_26
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Complemental strand, 40944970 - 40944473
Alignment:
| Q |
12 |
tcatcaggtaaaattattagacattttttatgtgatcgtagtgttctttgatggacaatgtgatcaaatatataacattgattgaaaatattttcataat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40944970 |
tcatcaggtaaaattattagacattttttatgtgatcgtagtgttctttgatggacaatgtgatcaaatatatagcattgattgaaaatattttcataat |
40944871 |
T |
|
| Q |
112 |
a-----aatcatatgaacatgtatgcatggcatacttttgtatatggatcatagtttaccgacgacggatcttcgagctcatgagcccccgtggtatgat |
206 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40944870 |
ataataaatcatatgaacatgtatgcatggcatacttttgtatatggatcatagtttaccgacaacggatcctcgagctcatgagcccccgtggtatgat |
40944771 |
T |
|
| Q |
207 |
tcagaggtaatcttggaaattggaccattttattaaaaatggcaaaattttaattatctcgagttttctttttgcagtatgatgtgtatggagatctatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944770 |
tcagaggtaatcttggaaattggaccatattattaaaaatggcaaaattttaattatctcgagttttctttttgcagtatgatgtgtatggagatctatt |
40944671 |
T |
|
| Q |
307 |
aggccttctaggtgcacaccctgtggctccactagtgtcattacatcaccttgatgtagtacaaccaatattcccaagtatgtcaagagcacaatccata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40944670 |
aggccttctaggtgcacaccctgtggctccactagtgtcattacatcaccttgatgtagtacaaccaatattcccaagtatgtcaagagcacaatccata |
40944571 |
T |
|
| Q |
407 |
aaacatttaatggaatccatcaaccaagactcatccagcatcatgcaacaatcaatatgctatgacaaaaacagattttggtcaatctcagtttcatg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40944570 |
aaacatttaatggaatccatcaaccaagactcatccagcatcatgcaacaatcaatatgctatgacaaaaacaggttttggtcaatctcagtttcatg |
40944473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 279 - 504
Target Start/End: Complemental strand, 22775950 - 22775725
Alignment:
| Q |
279 |
tgcagtatgatgtgtatggagatctattaggccttctaggtgcacaccctgtggctccactagtgtcattacatcaccttgatgtagtacaaccaatatt |
378 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||| || |||||||||||||| ||||| ||||| |
|
|
| T |
22775950 |
tgcagtatgatgtgtatggggacctattaggccttctaggagcacatcctgttgccccactagtgtcattgcaccaccttgatgtagtgcaaccgatatt |
22775851 |
T |
|
| Q |
379 |
cccaagtatgtcaagagcacaatccataaaacatttaatggaatccatcaaccaagactcatccagcatcatgcaacaatcaatatgctatgacaaaaac |
478 |
Q |
| |
|
|||| ||| |||| |||||| || | || |||||| |||| | || ||||| ||| ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
22775850 |
tccaaagatgaacagagtacaatcactacagcacttaatgaaatctgtgaagcaagattcaggtagcataatgcaacagtcaatttgctatgacaaaaag |
22775751 |
T |
|
| Q |
479 |
agattttggtcaatctcagtttcatg |
504 |
Q |
| |
|
|||| ||||| |||||||||||||| |
|
|
| T |
22775750 |
agatactggtccatctcagtttcatg |
22775725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University