View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_30 (Length: 472)
Name: NF13061_high_30
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 170 - 450
Target Start/End: Original strand, 51863524 - 51863804
Alignment:
| Q |
170 |
ggatgttgctaataatgttactcaaggtccttgtagagcattgcttggtgatctcactggtaaatttttctcctccttacgaatattatgatctgaaata |
269 |
Q |
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| T |
51863524 |
ggatgttgctaataatgttactcaaggtccttgtagagcattgcttggtgatctcactggtaaatttttctcctccttatgaatattatgatctgaaata |
51863623 |
T |
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| Q |
270 |
atttgcaattgtttcggtgtctagttgagtaaacttgagttcatttcccgagtttactatagttccagtttataactgaggcaattcgaaattgatgcct |
369 |
Q |
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| T |
51863624 |
atttgcaattgtttcggtgtctagttgagtaaacttgagttcatttccggagtttactatagttccagtttataactgaggcaattcgaaattgatgcct |
51863723 |
T |
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| Q |
370 |
aaactcgtggaattgtccgattggacaagttaacaaacccttcgtcgtcagatgttaggtaaggttggttatctgcaatct |
450 |
Q |
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| T |
51863724 |
aaactcgtggaattgtccgattggacaagttaacaaacccttcgtcgtcagatgttaggtaaggttggttatctgcaatct |
51863804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 51863374 - 51863497
Alignment:
| Q |
20 |
aagaagaccgtttatactcggaggagctgtttcgattgtgatttctgttcttattattggtcatgctgcggatttgggatggaaatttggtgataccaag |
119 |
Q |
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| T |
51863374 |
aagaagaccgtttatactcggaggagctgtttcgattgtgatttctgttcttattattggtcatgctgcggatttgggatggaaatttggtgataccaag |
51863473 |
T |
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| Q |
120 |
aatcatcgccattctgctgtcgcg |
143 |
Q |
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| T |
51863474 |
aatcatcgccattctgctgtcgcg |
51863497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 28520418 - 28520381
Alignment:
| Q |
171 |
gatgttgctaataatgttactcaaggtccttgtagagc |
208 |
Q |
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| T |
28520418 |
gatgttgctaataatgttactcaaggtccttgtagagc |
28520381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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