View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13061_high_31 (Length: 453)

Name: NF13061_high_31
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13061_high_31
NF13061_high_31
[»] chr6 (29 HSPs)
chr6 (171-320)||(25549419-25549566)
chr6 (171-320)||(26087174-26087321)
chr6 (171-334)||(33869603-33869770)
chr6 (200-343)||(29300410-29300554)
chr6 (243-346)||(25490543-25490647)
chr6 (87-176)||(25516980-25517069)
chr6 (262-346)||(25526556-25526641)
chr6 (353-433)||(26052485-26052564)
chr6 (353-433)||(26072538-26072617)
chr6 (180-239)||(34257873-34257932)
chr6 (366-430)||(25490434-25490498)
chr6 (353-433)||(26051369-26051448)
chr6 (353-433)||(26051555-26051634)
chr6 (353-433)||(26051741-26051820)
chr6 (353-433)||(26051927-26052006)
chr6 (353-433)||(26052113-26052192)
chr6 (353-433)||(26052299-26052378)
chr6 (110-176)||(25525231-25525295)
chr6 (89-176)||(26047659-26047746)
chr6 (89-176)||(26049684-26049771)
chr6 (89-176)||(26070853-26070940)
chr6 (89-176)||(26085940-26086027)
chr6 (200-343)||(34278071-34278212)
chr6 (367-433)||(25550162-25550227)
chr6 (180-296)||(34274367-34274485)
chr6 (89-145)||(26065903-26065959)
chr6 (280-343)||(29151829-29151892)
chr6 (367-433)||(26051197-26051262)
chr6 (367-433)||(26072366-26072431)
[»] chr8 (1 HSPs)
chr8 (246-307)||(5709559-5709623)
[»] chr3 (1 HSPs)
chr3 (246-307)||(2885796-2885860)
[»] chr2 (1 HSPs)
chr2 (246-307)||(16186188-16186252)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 171 - 320
Target Start/End: Original strand, 25549419 - 25549566
Alignment:
Q  171 atttatacgtaaagctagagatcaatcggtaaaggcaaaagatcattctttttattgatatagaaaccatatataagtttgcgaataaaacgagtaacat 270  Q
    |||| ||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||| |||  |||||||||||||||||||||| ||    
T  25549419 atttctacgtaaagctagaggtcattcggtaaaggcaaaaggtcattcattttattgatatagaaaccagata--agtttgcgaataaaacgagtaagat 25549516  T
Q  271 tgaaactaaaaatgcaaaagcaagatcaagtattttcttattatacttga 320  Q
    | |||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  25549517 tcaaactaaaaatgcaaaagcaagatcaagtagtttattaatatacttga 25549566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 171 - 320
Target Start/End: Original strand, 26087174 - 26087321
Alignment:
Q  171 atttatacgtaaagctagagatcaatcggtaaaggcaaaagatcattctttttattgatatagaaaccatatataagtttgcgaataaaacgagtaacat 270  Q
    |||| ||| ||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||| ||||  ||||||||||||||||||||| ||    
T  26087174 atttctacttaaagctagaggtcattcggtaaaggcaaaaggtcattcattttattgatatagaaaccagatat--gtttgcgaataaaacgagtaagat 26087271  T
Q  271 tgaaactaaaaatgcaaaagcaagatcaagtattttcttattatacttga 320  Q
    | |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  26087272 tcaaactaaaaatgcaaaagcaagatcaagtagtttcttagtatacttga 26087321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 171 - 334
Target Start/End: Complemental strand, 33869770 - 33869603
Alignment:
Q  171 atttatacgtaaagctagagatcaatcggtaaaggcaaaagatcattctttttattgatatagaaaccatata---taagtttgcgaataaaacgagt-a 266  Q
    |||| ||| |||| |||||| ||| | |||||||||||||||||| ||||||||||||||| ||||||| |||   ||||| |||||| | ||||||| |    
T  33869770 atttctacataaaactagaggtcatttggtaaaggcaaaagatcactctttttattgatattgaaaccagataacttaagtatgcgaacagaacgagtaa 33869671  T
Q  267 acattgaaactaaaaatgcaaaagcaagatcaagtattttcttattatacttgaaaataaatgtgata 334  Q
    |||| |||| | |||||||||||||||||| ||||| ||| ||| | ||||||| || || |||||||    
T  33869670 acatggaaaatcaaaatgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgata 33869603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 343
Target Start/End: Complemental strand, 29300554 - 29300410
Alignment:
Q  200 taaaggcaaaagatcattctttttattgatatagaaaccatatataagtttgcgaataaaac--gagtaa-cattgaaactaaaaatgcaaaagcaagat 296  Q
    |||| |||||| ||||||| |||||||||||||||| ||| |||  ||||||  ||||||||  |||||| |||| ||| |||||||||||||||||| |    
T  29300554 taaaagcaaaatatcattcattttattgatatagaagccagata--agtttgaaaataaaacaagagtaaacattcaaaataaaaatgcaaaagcaagtt 29300457  T
Q  297 caagtattttcttattatacttgaaaataaatgtgatatcccaacaa 343  Q
    |||||| |||| || | ||||||| ||||| ||||||||||||||||    
T  29300456 caagtagtttcctagtttacttgacaataattgtgatatcccaacaa 29300410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 25490647 - 25490543
Alignment:
Q  243 ataagtttgcgaataaaacgag--taacattgaaactaaaaatgcaaaagcaagatcaagtattttcttattatacttgaaaataaatgtgatatcccaa 340  Q
    |||||||||| |||||||||||  ||||||| ||| ||||||||||||||||||||||||||  |||||| |||| |||| ||||| |||||||| ||||    
T  25490647 ataagtttgcaaataaaacgagagtaacattcaaattaaaaatgcaaaagcaagatcaagtagattcttagtataattgacaataattgtgatat-ccaa 25490549  T
Q  341 caacca 346  Q
    ||||||    
T  25490548 caacca 25490543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 25516980 - 25517069
Alignment:
Q  87 ccttctgagagtgtgtgtt--cgttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 176  Q
    ||||||||||||||||||   ||| |||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||||||| |||||    
T  25516980 ccttctgagagtgtgtgtgtgcgtgcacacttgtcgcggaagatcaaattgataacagtaagcggcagaa--atatcttcataaacctttat 25517069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 25526556 - 25526641
Alignment:
Q  262 gagtaacattgaaactaaaaatgcaaaagcaa-gatcaagtattttcttattatacttgaaaataaatgtgatatcccaacaacca 346  Q
    |||| ||||| |||||||||||||||| |||| ||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||    
T  25526556 gagtgacattcaaactaaaaatgcaaatgcaaagatcaagtagtttcttagtatacttgacaataattgtgatatcccaacaacca 25526641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 26052485 - 26052564
Alignment:
Q  353 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||||||||||||||||| ||||||| ||| |||||||||| | |  |||||||||||||||||||||||    
T  26052485 ttcctatttgaacttttaaaatagtcccacgtcgacccaaa-aagtagtaagatggtatttataaactttaatgtgtacca 26052564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 26072538 - 26072617
Alignment:
Q  353 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||||||||||||||||| ||||||| ||| |||||||||| | |  |||||||||||||||||||||||    
T  26072538 ttcctatttgaacttttaaaatagtcccacgtcgacccaaa-aagtagtaagatggtatttataaactttaatgtgtacca 26072617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 34257873 - 34257932
Alignment:
Q  180 taaagctagagatcaatcggtaaaggcaaaagatcattctttttattgatatagaaacca 239  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  34257873 taaaactagagatcattcggtaaaggcaaaagatcaatctttttattgatatagaaacca 34257932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 25490498 - 25490434
Alignment:
Q  366 ttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgta 430  Q
    |||||||||||||||| ||||||| |||||||||||||| ||| ||||||||| |||||||||||    
T  25490498 ttttaaaatagtcccacgtcgacccaaataagtagtaaggtagtgtttataaattttaatgtgta 25490434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 26051369 - 26051448
Alignment:
Q  353 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| ||||||||||    
T  26051369 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtacca 26051448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 26051555 - 26051634
Alignment:
Q  353 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| ||||||||||    
T  26051555 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtacca 26051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 26051741 - 26051820
Alignment:
Q  353 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| ||||||||||    
T  26051741 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtacca 26051820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 26051927 - 26052006
Alignment:
Q  353 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| ||||||||||    
T  26051927 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtacca 26052006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 26052113 - 26052192
Alignment:
Q  353 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| ||||||||||    
T  26052113 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtacca 26052192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 26052299 - 26052378
Alignment:
Q  353 ttcctatttgaacttttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| ||||||||||    
T  26052299 ttcctatttgaacttttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtacca 26052378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 25525231 - 25525295
Alignment:
Q  110 cacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 176  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||    
T  25525231 cacacttgtcgcggaagatcaaatcgataaaagtaagcggcagaa--atatcttcataaacatttat 25525295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 26047659 - 26047746
Alignment:
Q  89 ttctgagagtgtgtgttc--gttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 176  Q
    |||||||||||||||| |  || | ||||||||| ||||||||||||||||||| |||| | ||||||  ||||||||||||||||||||    
T  26047659 ttctgagagtgtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattgtaagccgcagaa--atatcttcataaacatttat 26047746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 26049684 - 26049771
Alignment:
Q  89 ttctgagagtgtgtgttc--gttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 176  Q
    |||||||||||||||| |  || | ||||||||| ||||||||||||||||||| |||| | ||||||  ||||||||||||||||||||    
T  26049684 ttctgagagtgtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattgtaagccgcagaa--atatcttcataaacatttat 26049771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 26070853 - 26070940
Alignment:
Q  89 ttctgagagtgtgtgttc--gttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 176  Q
    |||||||||||||||| |  || | ||||||||| ||||||||||||||||||| |||| | ||||||  ||||||||||||||||||||    
T  26070853 ttctgagagtgtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattgtaagccgcagaa--atatcttcataaacatttat 26070940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 26085940 - 26086027
Alignment:
Q  89 ttctgagagtgtgtgttc--gttcacacttgtcgcggaagatcaaattgataatagtaaccggcagaaatatatcttcataaacatttat 176  Q
    |||||||||||||||| |  || | ||||||||| |||||||||||||||||||  ||| ||||||||  ||||||||||||||||||||    
T  26085940 ttctgagagtgtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattataagcggcagaa--atatcttcataaacatttat 26086027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 343
Target Start/End: Original strand, 34278071 - 34278212
Alignment:
Q  200 taaaggcaaaagatcattctttttattgatatagaaaccatatataagtttgcgaataaaacgagt---aacattgaaactaaaaatgcaaaagcaagat 296  Q
    |||||||||| |||||||| ||| ||| |||||||| ||| |||  ||||||| |||||||||||    |||||| |||  |||||||||||||||||||    
T  34278071 taaaggcaaatgatcattcattt-attaatatagaagccaaata--agtttgcaaataaaacgagagtaaacattaaaa--aaaaatgcaaaagcaagat 34278165  T
Q  297 caagtattttcttattatacttgaaaataaatgtgatatcccaacaa 343  Q
    |||| | | || || | ||||||| ||||| ||||||||||||||||    
T  34278166 caagcagtgtcatagtttacttgacaataactgtgatatcccaacaa 34278212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 433
Target Start/End: Original strand, 25550162 - 25550227
Alignment:
Q  367 tttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||| ||||||| ||| |||| | ||||||  ||||||||||||||||||||||||    
T  25550162 tttaaaatagtcccacgtcgacccaaa-aagtggcaagctattgtttataaactttaatgtgtacca 25550227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 296
Target Start/End: Original strand, 34274367 - 34274485
Alignment:
Q  180 taaagctagagatcaatcggtaaaggcaaaagatcattcttttt-attgatatagaaaccatatataagtttgcgaataaaacg--agt-aacattgaaa 275  Q
    |||| |||||| ||| |||||||||| ||||||||| ||||||| | |||||||||||||  | | |||||||| ||||||| |  ||| |||||| |||    
T  34274367 taaaactagaggtcattcggtaaaggtaaaagatcaatcttttttactgatatagaaacc--acacaagtttgcaaataaaatgtaagtaaacattcaaa 34274464  T
Q  276 ctaaaaatgcaaaagcaagat 296  Q
     ||||||||||||||||||||    
T  34274465 ataaaaatgcaaaagcaagat 34274485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 26065903 - 26065959
Alignment:
Q  89 ttctgagagtgtgtgttcgttcacacttgtcgcggaagatcaaattgataatagtaa 145  Q
    |||||||||||||||  ||| | ||||||||| ||||||||||||||||||| ||||    
T  26065903 ttctgagagtgtgtgcacgtgcgcacttgtcgtggaagatcaaattgataattgtaa 26065959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 29151829 - 29151892
Alignment:
Q  280 aaatgcaaaagcaagatcaagtattttcttattatacttgaaaataaatgtgatatcccaacaa 343  Q
    ||||||||||||||||||||  | | ||||| | ||||||| ||||| ||||||||||||||||    
T  29151829 aaatgcaaaagcaagatcaaccagtgtcttagtttacttgacaataattgtgatatcccaacaa 29151892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 433
Target Start/End: Original strand, 26051197 - 26051262
Alignment:
Q  367 tttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| ||||||||||    
T  26051197 tttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtacca 26051262  T

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Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 433
Target Start/End: Original strand, 26072366 - 26072431
Alignment:
Q  367 tttaaaatagtcccatgtcgaccaaaataagtagtaagctagcgtttataaactttaatgtgtacca 433  Q
    ||||||||||||||| |||||||| || ||||| |||| ||  ||||||||||||| ||||||||||    
T  26072366 tttaaaatagtcccacgtcgaccagaa-aagtaataaggtattgtttataaactttgatgtgtacca 26072431  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 5709559 - 5709623
Alignment:
Q  246 agtttgcgaataaaacgagt---aacattgaaactaaaaatgcaaaagcaagatcaagtattttc 307  Q
    ||||||| |||||||||||    |||||| ||| |||||||||||||||||||||||||| ||||    
T  5709559 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 5709623  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 2885860 - 2885796
Alignment:
Q  246 agtttgcgaataaaacgagt---aacattgaaactaaaaatgcaaaagcaagatcaagtattttc 307  Q
    ||||||| |||||||||||    |||||| ||| |||||||||||||||||||||||||| ||||    
T  2885860 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 2885796  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 16186188 - 16186252
Alignment:
Q  246 agtttgcgaataaaacgagt---aacattgaaactaaaaatgcaaaagcaagatcaagtattttc 307  Q
    ||||||| |||||||||||    |||||| ||| |||||||||||||||||||||||||| ||||    
T  16186188 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 16186252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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