View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_38 (Length: 387)
Name: NF13061_high_38
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 43439794 - 43440166
Alignment:
| Q |
7 |
ataattttctttctttattttggattaccaattataagattaactttgtactgtgtccttggctatgtaactcataaatgtacattctcnnnnnnngcat |
106 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43439794 |
ataattttctttctttcttttggattaccaattataagtttaactttgtactgtgtccttggctatgtaactcataaatgtacattctctttttttgcat |
43439893 |
T |
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| Q |
107 |
gcatagtgtggctttattttgctttaagctattttacatcattatattaattctgtgagtgttatcaagtttgttatttggtatcaagtatcaacatata |
206 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439894 |
gcatagtgtggctttattttactttaagctattttacatcattatattaattctgtgagtgttatcaagtttgttatttggtatcaagtatcaacatata |
43439993 |
T |
|
| Q |
207 |
tatcgtgactctttataatatgagcatgtcggagattcatgtatatatcaacccaattggaaataggctttaacaaagaccaagagaggccattgtctct |
306 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43439994 |
tattgtgactctttataatatgagcatgtcggagattcatgtatatatcaacccaattggaaataggctttaacaaagaccaagagaggtcattgtctct |
43440093 |
T |
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| Q |
307 |
tctatgagtggtgtattgatcctgtattttgcattggtaggccgtaggcatgcgttcccttgagcttcctttg |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43440094 |
tctatgagtggtgtattgatcctgtattttgcattggtagggcgtaggcatgcgttcccttgagcttcctttg |
43440166 |
T |
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