View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_40 (Length: 383)
Name: NF13061_high_40
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 35724789 - 35725083
Alignment:
| Q |
20 |
catggtgcatgcaatgcaacaaattcatctagtctaggtgaatgcctaccatttgattcataactagaactagaaggagaatttttggatattcatgcat |
119 |
Q |
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| T |
35724789 |
catggtgcatgcaatgcaacaaattcatctagtctaggtgaatgcctaccatttgattgataactagaactagaaggagaatttttggatattcatgcat |
35724888 |
T |
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| Q |
120 |
tnnnnnnnggtggatacttactatacccataagtcaagttaatttaaatgcacttaaatagaattaaatnnnnnnnnnntcagaggagannnnnnnnn-c |
218 |
Q |
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| T |
35724889 |
taaaaaaaggtggatact----atacccataagtcaagttaatttaaatgcacttaaaaagaattaaataaaaaaaa--tcagaggagattttttttttc |
35724982 |
T |
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| Q |
219 |
tgttaggttttgatgagtattgagagggcattctagaggtattgctgtagcctagaagtgtgatgtggtgaaggtaatggtgctaagagaaatgtagctt |
318 |
Q |
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| T |
35724983 |
tgttaggttttgatgagtattgagagggcattctagaggtattgctgtagcctagaagtgtgatgtggtgaaggtaatggtgctaagagaaatgtagctt |
35725082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 368
Target Start/End: Original strand, 35725095 - 35725126
Alignment:
| Q |
337 |
gacttcttaattagtaatggatagataaatat |
368 |
Q |
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| T |
35725095 |
gacttcttaattagtaatggatagataaatat |
35725126 |
T |
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