View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_high_42 (Length: 379)
Name: NF13061_high_42
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 38555587 - 38555925
Alignment:
| Q |
16 |
atataaactcaatatttatagccaaaaactatgactattatccgaacaatgtgtcctacagtgagtaatccttactcggctatctttgcgggtaatttat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
38555587 |
atataaactcaatatttatagccaaaaactatggctattatccgaacaa---gtcctacagtgagtagtccttacccggctatctttgcgggtaatttgt |
38555683 |
T |
|
| Q |
116 |
gaatattccttgctcttgggattgtgatgccccatgttcgactcccattttctccttcatgacatgatccattgaccacatccttagtgcacgattccat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
38555684 |
gaatattccttgctcttgggattgtgataccccatgttcgactcccattttctccttcacgacatgattcattgacaacatccttggtgcacgattccat |
38555783 |
T |
|
| Q |
216 |
gataattatgtctctttcatcatccctcttgatggttagtggtgctacaaacatggaacataagttttgtgcaccattgtccagtctccactatattttg |
315 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
38555784 |
gataatcatgtctctttcctcatccctcttgatggttagtggtgctacaaacatggaacatgagttttgtgcatcattgtccaatctccactatattttg |
38555883 |
T |
|
| Q |
316 |
actcagtatgaggtctccacgaccaacgtactgcgttagtgg |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38555884 |
actcagtatgaggtctccacgaccaacgtactgcgttagtgg |
38555925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University