View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13061_high_50 (Length: 347)

Name: NF13061_high_50
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13061_high_50
NF13061_high_50
[»] chr3 (3 HSPs)
chr3 (226-323)||(38937626-38937723)
chr3 (92-188)||(38937725-38937821)
chr3 (20-81)||(38938503-38938564)
[»] chr6 (1 HSPs)
chr6 (23-72)||(16658965-16659014)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 38937723 - 38937626
Alignment:
Q  226 ttgtaacaacctctacgcaaacaagtaaacgagccatttttgtccaaaggatatcatagatggaagatctatcactcggcaccaccgcagccaacata 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38937723 ttgtaacaacctctacgcaaacaagtaaacgagccatttttgtccaaacgatatcatagatggaagatctatcactcggcaccaccgcagccaacata 38937626  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 38937821 - 38937725
Alignment:
Q  92 acttagaaaagaccaaatgcgtctgaagactccacatcccacaaaaagatggtatgcacttgtacacaaacctgaattagcctcgataactccacga 188  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  38937821 acttggaaaagaccaaatgcgtctgaagactccacatcccacaaaaagatggtatgaacttgtacacaaacctgaattagccttgataactccacga 38937725  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 38938564 - 38938503
Alignment:
Q  20 tcaatcaggatttcaagtaaagcgtaagccattttgttggtatgagaacagaatgaatcaag 81  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  38938564 tcaatcaggatttcaagtaaagcgtcagccattttgcaggtatgagaacagaatgaatcaag 38938503  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 16658965 - 16659014
Alignment:
Q  23 atcaggatttcaagtaaagcgtaagccattttgttggtatgagaacagaa 72  Q
    |||| |||| |||||||||| | ||||||||||| |||||||||||||||    
T  16658965 atcacgattccaagtaaagcttcagccattttgtaggtatgagaacagaa 16659014  T

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