View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_51 (Length: 346)
Name: NF13061_high_51
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_51 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0043 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 139 - 346
Target Start/End: Complemental strand, 31171956 - 31171749
Alignment:
| Q |
139 |
ttagactagccgtggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtagaagttttaat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31171956 |
ttagactagccgtggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtagaagttttaat |
31171857 |
T |
|
| Q |
239 |
aaaattaattgatgcttaattgtttggttttatagccaaacaagataattagctcttagagcgaataattttaatacccatgatagacctaaacaaaatc |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31171856 |
aaaattaattgatgcttaattgtttggttttatagccaaacaagataattagctcttagagcgaataattttaatacccatcatagacctaaacaaaatc |
31171757 |
T |
|
| Q |
339 |
caacaaac |
346 |
Q |
| |
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|||||||| |
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| T |
31171756 |
caacaaac |
31171749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 31172049 - 31171953
Alignment:
| Q |
18 |
gaatttttatctgagacttgcttaggatatttgaat-agtttagacgcttgatttaaattatttcaaatgaagattgttaagttccataacgcttag |
113 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31172049 |
gaatttttatctgagacctgcttaggatatttgaattagtttaaacgcttgatttaaattatttcaaatgaagattgttaggttccataacgcttag |
31171953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 53 - 286
Target Start/End: Original strand, 21655725 - 21655957
Alignment:
| Q |
53 |
tagtttagacgcttgatttaaattatttcaaatgaagattgttaagttccataacgcttagttgtaggtttggttgaacttgatatttagactagccgtg |
152 |
Q |
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|||||||||| ||||||||||||||||| ||||||||| ||||| |||||||||| ||||||| | |||||||||||||||| || | |||||| |||| |
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| T |
21655725 |
tagtttagactcttgatttaaattattt-aaatgaagactgttatgttccataacacttagttattggtttggttgaacttggtaatcagactacccgtc |
21655823 |
T |
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| Q |
153 |
gttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtagaagttttaataaaattaattgatg |
252 |
Q |
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||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||| | ||| ||||||| |
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| T |
21655824 |
attttgtgacgcatgctccaaaataatggtaaatcaaattctagatttttgtgacacttgctccaaaaattagtagaagttataatgagattgattgatg |
21655923 |
T |
|
| Q |
253 |
cttaattgtttggttttatagccaaacaagataa |
286 |
Q |
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||||||| || |||||||| |||||||||||| |
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| T |
21655924 |
cttaatttgttagttttataaacaaacaagataa |
21655957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 16208322 - 16208419
Alignment:
| Q |
132 |
ttgatatttagactagccgtggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtaga |
229 |
Q |
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|||| |||||||||| | ||||||||||| |||| |||| ||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||| |
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| T |
16208322 |
ttgacatttagactaactatggttttgtgatgcttcttccaaaatcaaagtaaatcaaattcaagatttttgtgaagcttgttcctgaaatcagtaga |
16208419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 19300196 - 19300080
Alignment:
| Q |
132 |
ttgatatttagactagccgtggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtagaag |
231 |
Q |
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|||||||||||| || | |||||||||||||||| |||| ||| | |||||| ||||||||||||||||| | ||||||||| |||||||||||| |
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| T |
19300196 |
ttgatatttagattaactatggttttgtgacgcttcttccaaaattacagtaaattaaattctagatttttgtaaagcttgttcctgaaatcagtagaaa |
19300097 |
T |
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| Q |
232 |
ttttaataaaattaatt |
248 |
Q |
| |
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| |||| ||||||||| |
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| T |
19300096 |
tcctaatgaaattaatt |
19300080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 60 - 274
Target Start/End: Original strand, 148483 - 148696
Alignment:
| Q |
60 |
gacgcttgatttaaattatttcaaatgaagattgttaagttccataacgcttagttgtaggtttggttgaacttgatatttagactagccgtggttttgt |
159 |
Q |
| |
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|||||||||||||||||||||||||||| |||| || |||| |||| |||||| |||||||||||||||| || |||| ||| |||||||| |||||| |
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| T |
148483 |
gacgcttgatttaaattatttcaaatgatgatttttgggttctataatgcttaggcgtaggtttggttgaacatgttattcagattagccgtgattttgt |
148582 |
T |
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| Q |
160 |
gacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtagaagttttaataaaattaattgatgcttaatt |
259 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||| || || |||| |||| ||||||||||||||||| |
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| T |
148583 |
gacgcttgctccaaaatcacattaaatcaaattctagatttttttgacgcttgctccaaaaattagcagtagttctaat-gaattaattgatgcttaaac |
148681 |
T |
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| Q |
260 |
gtttggttttatagc |
274 |
Q |
| |
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| || |||||||||| |
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| T |
148682 |
ggttagttttatagc |
148696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 60 - 274
Target Start/End: Original strand, 13658722 - 13658935
Alignment:
| Q |
60 |
gacgcttgatttaaattatttcaaatgaagattgttaagttccataacgcttagttgtaggtttggttgaacttgatatttagactagccgtggttttgt |
159 |
Q |
| |
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|||||||||||||||||||||||||||| |||| || |||| |||| |||||| |||||||||||||||| || |||| ||| |||||||| |||||| |
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| T |
13658722 |
gacgcttgatttaaattatttcaaatgatgatttttgggttctataatgcttaggcgtaggtttggttgaacatgttattcagattagccgtgattttgt |
13658821 |
T |
|
| Q |
160 |
gacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtagaagttttaataaaattaattgatgcttaatt |
259 |
Q |
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|
||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||| || || |||| |||| ||||||||||||||||| |
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| T |
13658822 |
gacgcttgctccaaaatcacattaaatcaaattctagatttttttgacgcttgctccaaaaattagcagtagttctaat-gaattaattgatgcttaaac |
13658920 |
T |
|
| Q |
260 |
gtttggttttatagc |
274 |
Q |
| |
|
| || |||||||||| |
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| T |
13658921 |
ggttagttttatagc |
13658935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 39323547 - 39323686
Alignment:
| Q |
65 |
ttgatttaaattatttcaaatgaagattgttaagttccataacgcttagttgtaggtttggttgaacttgatatttagactagccgtggttttgtgacgc |
164 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||| ||||||||| || | ||| |||| ||| |||||||||| |
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| T |
39323547 |
ttgatttaaattatttcaaatgaagattgttaggttttataacacttagttataggtttgattgaacttgttaatcagattagctgtgattttgtgacgg |
39323646 |
T |
|
| Q |
165 |
ttgctccataatcatggtaaatcaaattctagatttttgt |
204 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
39323647 |
ttgctccaaaatcatgctaaatcaaattgtagatttttgt |
39323686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 909 - 831
Alignment:
| Q |
151 |
tggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtaga |
229 |
Q |
| |
|
||||||||||| |||| |||| ||||| ||||||||||||| |||||||||||| || |||||| ||||||||||| |
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| T |
909 |
tggttttgtgatgcttcttccaaaatcaaagtaaatcaaattcaagatttttgtgaagcatgttcctgaaatcagtaga |
831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 24696 - 24618
Alignment:
| Q |
151 |
tggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtaga |
229 |
Q |
| |
|
||||||||||| |||| |||| ||||| ||||||||||||| |||||| ||||| || |||||| ||||||||||| |
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|
| T |
24696 |
tggttttgtgatgcttcttccaaaatcaaagtaaatcaaattcaagatttgtgtgaagcatgttcctgaaatcagtaga |
24618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 39846 - 39768
Alignment:
| Q |
151 |
tggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtaga |
229 |
Q |
| |
|
||||||||||| |||| |||| ||||| ||||||||||||| |||||| ||||| || |||||| ||||||||||| |
|
|
| T |
39846 |
tggttttgtgatgcttcttccaaaatcaaagtaaatcaaattcaagatttgtgtgaagcatgttcctgaaatcagtaga |
39768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 12873282 - 12873216
Alignment:
| Q |
135 |
atatttagactagccgtggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttt |
201 |
Q |
| |
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||||||||| ||| |||||||| |||||||| |||| ||| || ||||||||||||||||||||| |
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| T |
12873282 |
atatttagattagttgtggttttatgacgctttttccaaaattattgtaaatcaaattctagatttt |
12873216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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