View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_57 (Length: 295)
Name: NF13061_high_57
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 23378690 - 23378962
Alignment:
| Q |
16 |
gttgttatatttaagtaaattataaacaataaggaatatctattgcatattaatttttcaactagnnnnnnnacttaatgtgcgatcacattcaaaaggc |
115 |
Q |
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| T |
23378690 |
gttgttatatttaagtaaattataaacaataaggaatatctattgcatattaatttttcaaccagtttttttacttaatgtgcgatcacactcaaaaggc |
23378789 |
T |
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| Q |
116 |
ggtgtatattgcatattgcgaatgacaaattaagctatgctattaagattcttgaaaatgacattgatgtagaaaacatgttttagtggagaataggaca |
215 |
Q |
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| T |
23378790 |
ggtgtatattgcatagtgcgaatgacaaattaagctatgctattaagattcttgaaaatgacattgatttagaaaacatattttagtggagaataggaca |
23378889 |
T |
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| Q |
216 |
cactgca-tc--ccctcacatgtacaattttgcacctactatgccaatgtatttttactttgaatcccctttg |
285 |
Q |
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| T |
23378890 |
cagtcaactcagccctcacatgtacaattttgcacctactatgccaatgtatttttactttgaatcctctttg |
23378962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 25933660 - 25933704
Alignment:
| Q |
158 |
ttaagattcttgaaaatgacattgatgtagaaaacatgttttagt |
202 |
Q |
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| T |
25933660 |
ttaagcttcttgataatgacattgatgtagaagacatgttttagt |
25933704 |
T |
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