View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_6 (Length: 669)
Name: NF13061_high_6
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 7739249 - 7739570
Alignment:
| Q |
1 |
gtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagttttctgaatcacacagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739249 |
gtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagttttctgaatcacacagag |
7739348 |
T |
|
| Q |
101 |
cacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaagaacaagcaaacagacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7739349 |
cacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaagaataagcaaacagacc |
7739448 |
T |
|
| Q |
201 |
acaaatggaaatctggtactatactttctccacaaaaagttaagttggtgtaagaatgtgttagcttttatcatccttgttaaaaaccaatttccaccca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739449 |
acaaatggaaatctggtactatactttctccacaaaaagttaagttggtgaaagaatgtgttagcttttatcatccttgttaaaaaccaatttccaccca |
7739548 |
T |
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| Q |
301 |
atgttgaatatcttagattccc |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7739549 |
atgttgaatatcttagattccc |
7739570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 382 - 658
Target Start/End: Original strand, 7739643 - 7739916
Alignment:
| Q |
382 |
ttccgacttaagtaagttcaagaaaactttaaccattttggtgtatgacctaaaacctatcaacgaaaaacagaccatgtgcgcatacgcacatacacac |
481 |
Q |
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| T |
7739643 |
ttccgacttaagtaagttcaagaaaactttaaccattttggtgtatgacctaaaacctatcaacgaaaa-cagaccatgtgcgcatacgcacatacacac |
7739741 |
T |
|
| Q |
482 |
gtgtgcctagaagtgtgcaaacacacttacatacatattg--acacacacacgcgcgcgcgcatgtagaagcatttattacatacatatcgaaacacacg |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739742 |
gtgtgcctagaagtgtgcaaacacacttacatacatatcgacacacacacacacgcgcgcgcatgtagaagcatttattacatacatatcgaaacacact |
7739841 |
T |
|
| Q |
580 |
ggcacatctagaagcatttattacatacatacgtacataccgacacacacgcgcacatgtagaagcatttaattgatga |
658 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7739842 |
cgcacatgtagaagcatttattacataca----tacataccgacacacacgcgcacatgtagaagcatttaattaatga |
7739916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38047514 - 38047744
Alignment:
| Q |
1 |
gtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagttttctgaatcacacagag |
100 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||| ||||| || ||| |||| ||||||||||||||||||| | |||||||||||| | | |
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| T |
38047514 |
gtgcaaagcagagaaaatcataaaatc-aaataagctcaatgcagaaagattcaggaatggaacagaatcttgcacaaaaatcatctgaatcacacgggg |
38047612 |
T |
|
| Q |
101 |
cacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaagaacaagcaaacagacc |
200 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||| |
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| T |
38047613 |
gacaggaaaaagtggaagtgaaaacttttgctgttaaaacctaaaacacaatctccaaaagacaacat---------caaaaagaacaagcaaacagacc |
38047703 |
T |
|
| Q |
201 |
acaaatggaaatctggtactatactttctccacaaaaagtt |
241 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
38047704 |
acaaatggaaaattggtactatattttctccacaaaaagtt |
38047744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 2290717 - 2290761
Alignment:
| Q |
398 |
ttcaagaaaactttaa-ccattttggtgtatgacctaaaacctat |
441 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2290717 |
ttcaagaaaactttaagccattttggtgtatgacctaaaacctat |
2290761 |
T |
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