View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_66 (Length: 264)
Name: NF13061_high_66
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 47686603 - 47686857
Alignment:
| Q |
1 |
tatattttgttaataaaaaatgtgagatgtcctctcaataaaaaattgggagattttttaaatgaatcattgtgattgttagaagatgaaatgctactta |
100 |
Q |
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| T |
47686603 |
tatattttgttaataaaaaatgtgagatgtcctctaaataaaaaattgtgagattttttaaatgaatcattgtgattgttagaagatgaaatgctactta |
47686702 |
T |
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| Q |
101 |
agaatgatacataatttctggaaataaggaaaacaannnnnnnnagcatttttattgtttcttaaaatatgcacacaatttataagctagttcctctata |
200 |
Q |
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| T |
47686703 |
agaatgatacataatttctggaaataaggaaaacaattttttttagcatttttattgtttcttaaaatatgcacacaatttataagctagttcctctata |
47686802 |
T |
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| Q |
201 |
attaactgagttttattgtaccattaaacatgagcattttattgtttcccctttg |
255 |
Q |
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| T |
47686803 |
attaactgagttttattgtaccattaaacatgagcattttattgtttcccctttg |
47686857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 47692767 - 47692825
Alignment:
| Q |
50 |
gagattttttaaatgaatcattgtgattgttagaagatgaaatgctacttaagaatgat |
108 |
Q |
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| T |
47692767 |
gagatttttaaaatgaatcattttgatgattaaaagatgaaatgctacttaagaatgat |
47692825 |
T |
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