View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_69 (Length: 251)
Name: NF13061_high_69
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_69 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 29586758 - 29586512
Alignment:
| Q |
5 |
ggtacattattctcataatctatggatcacttcctccaaggttttcggaaaacgcttacgcagtctttgttgaagctcttgctccttcgtcttcctattg |
104 |
Q |
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| T |
29586758 |
ggtacatttttctcataatctatggatcacttcctccaaggttttcggaaaacgcttacgcagtcttcgttgaagctcttgctccttcgtcttcctattg |
29586659 |
T |
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| Q |
105 |
gatagtcacattctttgtggtgatctcaactcttataccatacttctcatacaaagcaattcagatgcggttctttccaatgtatcacgaaatggtacag |
204 |
Q |
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| T |
29586658 |
gatagtcacattctttgtggtgatctcaactcttataccatacttctcatacaaagcaattcagatgcggttctttccaatgtatcacgaaatggtacag |
29586559 |
T |
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| Q |
205 |
tggataaggtatgaagggaagaccgaggatcccgagtactgtgctat |
251 |
Q |
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| T |
29586558 |
tggataaggtatgaagggaagactgaggatcctgagtactgtgctat |
29586512 |
T |
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Target: scaffold0021 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 155868 - 156000
Alignment:
| Q |
95 |
cttcctattggatagtcacattctttgtggtgatctcaactcttataccatacttctcatacaaagcaattcagatgcggttctttccaatgtatcacga |
194 |
Q |
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| T |
155868 |
cttcgtattggatcgtgacattgtttgtggtgatctcaacactcataccatatttgtcttactcggcaatcaagatgcagttctttccattttatcatga |
155967 |
T |
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| Q |
195 |
aatggtacagtggataaggtatgaagggaagac |
227 |
Q |
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| T |
155968 |
gatgatacaatggataaggtatgaggggaagac |
156000 |
T |
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