View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_72 (Length: 250)
Name: NF13061_high_72
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31761204 - 31760965
Alignment:
| Q |
1 |
tattggtaaatttggagtagtatatataaccctagaaactaagaaattttgctttcatcaattaacagctgggtggtaagcaatattggtaccaagtgtt |
100 |
Q |
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| T |
31761204 |
tattggtgaatttggagtagtatatataaccctagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgtt |
31761105 |
T |
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| Q |
101 |
actaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaag |
200 |
Q |
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| T |
31761104 |
actaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaag |
31761005 |
T |
|
| Q |
201 |
tcgcatggactaaaccttaaggacttagttgttctctctg |
240 |
Q |
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| T |
31761004 |
tctcatggacttaaccttaaagacttagttgttctatctg |
31760965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 31749520 - 31749751
Alignment:
| Q |
9 |
aatttggagtagtatatataaccctagaaactaagaaattttgctttcatcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaa |
108 |
Q |
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| T |
31749520 |
aatttcgaatagtgtatgtaacactagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaa |
31749619 |
T |
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| Q |
109 |
gaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtcgcatgg |
208 |
Q |
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| T |
31749620 |
gaagagattcaagatttgcaagcagagatgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcaaaaatttcaagtcacatgg |
31749719 |
T |
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| Q |
209 |
actaaaccttaaggacttagttgttctctctg |
240 |
Q |
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| T |
31749720 |
actaaaccttaaggacttagttgttctatctg |
31749751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 58 - 240
Target Start/End: Complemental strand, 31767900 - 31767718
Alignment:
| Q |
58 |
tcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcc |
157 |
Q |
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| T |
31767900 |
tcaattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcc |
31767801 |
T |
|
| Q |
158 |
tcctccatttttcaatttctcacaactcatcacaaatttcaagtcgcatggactaaaccttaaggacttagttgttctctctg |
240 |
Q |
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| T |
31767800 |
tcctccattctttaacttctcacaactcatcacaaatttcaagtcacatggactaaaccttaaagatttagttgttctatctg |
31767718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 31753537 - 31753353
Alignment:
| Q |
56 |
catcaattaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatctt |
155 |
Q |
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||||||||||||| |||| ||| | |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
31753537 |
catcaattaacagttgggcggtcacaaatattggtaccaagtgttactgggcagaagagattcaagatttgcaagcagagatgcagcaaatataaatctt |
31753438 |
T |
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| Q |
156 |
cctcctccatttttcaatttctcacaactcatcacaaatttcaagtcgcatggactaaaccttaaggacttagttgttctctctg |
240 |
Q |
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| T |
31753437 |
ccaccggcattttttaacttctcacaactcatcgcaaattttcagtctcaaggactaaaccttaaagacttagttgttctatctg |
31753353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 27887869 - 27887907
Alignment:
| Q |
84 |
tattggtaccaagtgttactaggaagaagagattcaaga |
122 |
Q |
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| T |
27887869 |
tattggtaccaagtgctactaggaagaagagatgcaaga |
27887907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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