View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_73 (Length: 248)
Name: NF13061_high_73
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 47686350 - 47686115
Alignment:
| Q |
1 |
aattcccgaaagccgaatccaaacattcagtacattcttgtttagacaaatctggtgtacactgaaccaaaccatagatagtgtcattaacatcccttct |
100 |
Q |
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| T |
47686350 |
aattcccgaaagccgaatccaaacattcagtacattcttgtttagacaaatctggtgtacactgaaccaaaccataaatagtgtcattaacatcacttct |
47686251 |
T |
|
| Q |
101 |
actacttgattcattcattactttcacactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47686250 |
actacttgattcattcattactttcacactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaata |
47686151 |
T |
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| Q |
201 |
agtgtctgattaaatgcatcattccctactgttttg |
236 |
Q |
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| T |
47686150 |
agtgtctgattaaatgcatcattccctactgttttg |
47686115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 47674231 - 47674015
Alignment:
| Q |
6 |
ccgaaagccgaatccaaacattcagtacattcttgtttagacaaatctggtgtacactgaaccaaaccatagatagtgtcattaacatcccttctactac |
105 |
Q |
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|||||||||||||| ||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||| || ||||||||| || || ||||||| |
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| T |
47674231 |
ccgaaagccgaatctaaacattcattacattcttgcttagacagatccggtgtacactgaaccaaaccataaattgtgtcattagtattactactactac |
47674132 |
T |
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| Q |
106 |
ttgattcattcattactttcacactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaataagtgt |
205 |
Q |
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| T |
47674131 |
ttgattcatcaattactttcacactcttttcagcaaacttcttacgcgaatcaccatcagcggccacggttttaagttcatccaacaaatcaagaagtgt |
47674032 |
T |
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| Q |
206 |
ctgattaaatgcatcat |
222 |
Q |
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|||||||||||||||| |
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| T |
47674031 |
ttgattaaatgcatcat |
47674015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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