View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_high_8 (Length: 629)
Name: NF13061_high_8
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 88 - 612
Target Start/End: Complemental strand, 17368427 - 17367898
Alignment:
| Q |
88 |
tacagcgaggtccacgtctatatcggcaataatcatctccatacctttcttggtcaagcttgtgatcaccaagagtgagcatactaagatcaagaacaat |
187 |
Q |
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| T |
17368427 |
tacagcgaggtccacgtctatatcggcaataatcatctccatacctttcttggtcaagcttgtgatcaccaagagcaaacatgctaagatcaagaacaat |
17368328 |
T |
|
| Q |
188 |
gaagagaacaagaacactcacagaaagccattttccttggaaccccataaatgccaaatagaaataaaacacttgtgtaatcgtttccttttacactttg |
287 |
Q |
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| T |
17368327 |
gaagagaacaagaacactcacagaaagccattttccttggaaacccataaatgccaaatagaaataaatcacttgtgtactcgtttccttttacactttg |
17368228 |
T |
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| Q |
288 |
ctgctgtggt-----agattgaccactatatgcttttatagactttgtccaatatcagtgtgtattaaacactacgtgttgtgaaccgttgggggagtag |
382 |
Q |
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| T |
17368227 |
ctgctgtgcttttatagattgaccactatatgcttttatagactttgtccaatatcagtgtgtattaaacactacgtgttgtgaaccgttgggggagtag |
17368128 |
T |
|
| Q |
383 |
gggaaagcattaaacgaatacaagtggatggaactactgcagtagtagaaataaaccaagtcaaagtcttacgcggactctggttgcatgtggtatatac |
482 |
Q |
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| T |
17368127 |
gggaaagcattaaacgaatacaagtggatggaactactgcagtagtagaaataaacgaagtcaaagtcttacgcggactctggttgcatgtggtatatac |
17368028 |
T |
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| Q |
483 |
aatatactcattttttcttttctttctgataatgttaagatcaatttacgtttagaggaatgttaagatcattattcatttgcgagttttaggtataaat |
582 |
Q |
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| T |
17368027 |
aatatactcattttttcttttctttctgataatgttaagatcaatttatgtttagaggaatgttaagatcattattcatttgcgagttttaggtataaat |
17367928 |
T |
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| Q |
583 |
aaacattacatattgacatcagatgtatgt |
612 |
Q |
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| T |
17367927 |
aaacattacatattgacatcagatgtatgt |
17367898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 88 - 407
Target Start/End: Complemental strand, 17363956 - 17363639
Alignment:
| Q |
88 |
tacagcgaggtccacgtctatatcggcaataatcatctccatacctttcttgg-tcaagcttgtgatcaccaagagtgagcatactaagatcaagaacaa |
186 |
Q |
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|||||||||||||||||||| |||| |||| |||||| ||| ||||||||||| |||||||||||||||||||||| | ||| |||||||||||||||| |
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| T |
17363956 |
tacagcgaggtccacgtctaaatcgacaatcatcatccccaaacctttcttgggtcaagcttgtgatcaccaagagcaaacatgctaagatcaagaacaa |
17363857 |
T |
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| Q |
187 |
tgaagagaacaagaacactcacagaaagccattttccttggaaccccataaatgccaaatagaaataaaacacttgtgtaatcgtttccttttacacttt |
286 |
Q |
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| T |
17363856 |
tgaagagaacaagaacactcacagaaagccattttccttggaaacccataaatgccaaatagaaagaaaacacttgtgtacttgtttcttcttgcacttt |
17363757 |
T |
|
| Q |
287 |
gctgctgtggtagattgaccactatatgcttttatagactttgtccaatatcagtgtgtattaaacactacgtgttgtgaaccgttgggggagtagggga |
386 |
Q |
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| T |
17363756 |
gctgctgtagtagattaaccac--tgtgcttatatag-cttcgtccattatcagtgtgtattaaattctgcgtgttgtgaactgttgggggagtagcggg |
17363660 |
T |
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| Q |
387 |
aagcattaaacgaatacaagt |
407 |
Q |
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|||||||||||||| |||||| |
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| T |
17363659 |
aagcattaaacgaaaacaagt |
17363639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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